EuRBPDB

Description

Ensembl ID: MGP_129S1SvImJ_G0035109 (Gene tree)
Gene ID: -
Gene Symbol: Syncrip
Alias: 2610109K23Rik|4632417O19Rik|GRY-RBP|Hnrpq|Nsap1|Nsap1l|RRM RNA binding protein GRY-RBP|hnRNP Q|pp68
Full Name: synaptotagmin binding%2C cytoplasmic RNA interacting protein
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Minus strand
Length: 36662 bases
Position: chr9:89324728-89361389
Accession: 1891690
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0093544	RRM_5	PF13893.6	2.5e-06	1	1
MGP_129S1SvImJ_P0093548	RRM_5	PF13893.6	3.2e-06	1	1
MGP_129S1SvImJ_P0093545	RRM_5	PF13893.6	4.8e-06	1	1
MGP_129S1SvImJ_P0093542	RRM_5	PF13893.6	4.8e-06	1	1
MGP_129S1SvImJ_P0093547	RRM_5	PF13893.6	6.2e-06	1	1
MGP_129S1SvImJ_P0093545	RRM_1	PF00076.22	3e-44	1	3
MGP_129S1SvImJ_P0093545	RRM_1	PF00076.22	3e-44	2	3
MGP_129S1SvImJ_P0093545	RRM_1	PF00076.22	3e-44	3	3
MGP_129S1SvImJ_P0093542	RRM_1	PF00076.22	3e-44	1	3
MGP_129S1SvImJ_P0093542	RRM_1	PF00076.22	3e-44	2	3
MGP_129S1SvImJ_P0093542	RRM_1	PF00076.22	3e-44	3	3
MGP_129S1SvImJ_P0093547	RRM_1	PF00076.22	4.7e-44	1	3
MGP_129S1SvImJ_P0093547	RRM_1	PF00076.22	4.7e-44	2	3
MGP_129S1SvImJ_P0093547	RRM_1	PF00076.22	4.7e-44	3	3
MGP_129S1SvImJ_P0093544	RRM_1	PF00076.22	8.4e-43	1	3
MGP_129S1SvImJ_P0093544	RRM_1	PF00076.22	8.4e-43	2	3
MGP_129S1SvImJ_P0093544	RRM_1	PF00076.22	8.4e-43	3	3
MGP_129S1SvImJ_P0093548	RRM_1	PF00076.22	1.3e-42	1	3
MGP_129S1SvImJ_P0093548	RRM_1	PF00076.22	1.3e-42	2	3
MGP_129S1SvImJ_P0093548	RRM_1	PF00076.22	1.3e-42	3	3
MGP_129S1SvImJ_P0093543	RRM_1	PF00076.22	1.4e-31	1	2
MGP_129S1SvImJ_P0093543	RRM_1	PF00076.22	1.4e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0093551	-	2387	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0093552	-	416	-	MGP_129S1SvImJ_P0093552	94 (aa)	-	-
MGP_129S1SvImJ_T0093549	-	549	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0093548	-	1767	-	MGP_129S1SvImJ_P0093548	588 (aa)	-	-
MGP_129S1SvImJ_T0093545	-	3462	-	MGP_129S1SvImJ_P0093545	561 (aa)	-	-
MGP_129S1SvImJ_T0093544	-	3344	-	MGP_129S1SvImJ_P0093544	527 (aa)	-	-
MGP_129S1SvImJ_T0093547	-	2093	-	MGP_129S1SvImJ_P0093547	623 (aa)	-	-
MGP_129S1SvImJ_T0093546	-	1925	-	MGP_129S1SvImJ_P0093546	67 (aa)	-	-
MGP_129S1SvImJ_T0093550	-	766	-	MGP_129S1SvImJ_P0093550	196 (aa)	-	-
MGP_129S1SvImJ_T0093543	-	3175	-	MGP_129S1SvImJ_P0093543	448 (aa)	-	-
MGP_129S1SvImJ_T0093542	-	9412	XM_006511293	MGP_129S1SvImJ_P0093542	562 (aa)	XP_006511356	Q7TMK9

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0035109	Syncrip	99	81.911	MGP_129S1SvImJ_G0028965	Hnrnpr	100	82.486
MGP_129S1SvImJ_G0035109	Syncrip	58	52.308	MGP_129S1SvImJ_G0025037	A1cf	51	53.398
MGP_129S1SvImJ_G0035109	Syncrip	75	57.522	MGP_129S1SvImJ_G0029587	Rbm47	88	58.451
MGP_129S1SvImJ_G0035109	Syncrip	53	54.333	MGP_129S1SvImJ_G0027329	Rbm46	63	55.000