EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0035140 (Gene tree)
Gene ID: -
Gene Symbol: Xrn1
Alias: Dhm2|exo|mXrn1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Plus strand
Length: 107408 bases
Position: chr9:97113654-97221061
Accession: 891964
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0093682	XRN_N	PF03159.18	3e-96	1	1
MGP_129S1SvImJ_P0093678	XRN_N	PF03159.18	1.6e-95	1	1
MGP_129S1SvImJ_P0093677	XRN_N	PF03159.18	1.6e-95	1	1
MGP_129S1SvImJ_P0093679	XRN_N	PF03159.18	9.2e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0093685	-	3045	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0093677	-	5499	XM_006511153	MGP_129S1SvImJ_P0093677	1723 (aa)	XP_006511216	A0A087WNV6
MGP_129S1SvImJ_T0093684	-	844	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0093682	-	3093	-	MGP_129S1SvImJ_P0093682	969 (aa)	-	-
MGP_129S1SvImJ_T0093683	-	3615	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0093680	-	3357	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0093681	-	6235	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0093679	-	357	-	MGP_129S1SvImJ_P0093679	40 (aa)	-	-
MGP_129S1SvImJ_T0093678	-	10220	-	MGP_129S1SvImJ_P0093678	1719 (aa)	-	-

Gene Model

Click here to download MGP_129S1SvImJ_G0035140's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0035140's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0035140	Xrn1	90	66.667	MGP_129S1SvImJ_G0026601	Xrn2	71	39.060