EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0035232 (Gene tree)
Gene ID: -
Gene Symbol: Pcbp4
Alias: 1200003L19Rik|AlphaCP-4
Full Name: poly(rC) binding protein 4
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Plus strand
Length: 9893 bases
Position: chr9:108263883-108273775
Accession: 1890471
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0094131	KH_1	PF00013.29	3.4e-50	1	3
MGP_129S1SvImJ_P0094131	KH_1	PF00013.29	3.4e-50	2	3
MGP_129S1SvImJ_P0094131	KH_1	PF00013.29	3.4e-50	3	3
MGP_129S1SvImJ_P0094132	KH_1	PF00013.29	2.7e-32	1	2
MGP_129S1SvImJ_P0094132	KH_1	PF00013.29	2.7e-32	2	2
MGP_129S1SvImJ_P0094139	KH_1	PF00013.29	1.5e-21	1	1
MGP_129S1SvImJ_P0094134	KH_1	PF00013.29	2.3e-15	1	1
MGP_129S1SvImJ_P0094136	KH_1	PF00013.29	1.2e-13	1	1
MGP_129S1SvImJ_P0094141	KH_1	PF00013.29	5.3e-09	1	1
MGP_129S1SvImJ_P0094132	KH_2	PF07650.17	8.3e-12	1	1
MGP_129S1SvImJ_P0094134	KH_2	PF07650.17	0.00014	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0094131	-	1951	XM_006511779	MGP_129S1SvImJ_P0094131	403 (aa)	XP_006511842	A0A087WP16
MGP_129S1SvImJ_T0094133	-	477	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0094132	-	893	-	MGP_129S1SvImJ_P0094132	197 (aa)	-	-
MGP_129S1SvImJ_T0094135	-	253	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0094134	-	752	-	MGP_129S1SvImJ_P0094134	113 (aa)	-	-
MGP_129S1SvImJ_T0094137	-	846	-	MGP_129S1SvImJ_P0094137	150 (aa)	-	-
MGP_129S1SvImJ_T0094136	-	232	-	MGP_129S1SvImJ_P0094136	77 (aa)	-	-
MGP_129S1SvImJ_T0094139	-	765	-	MGP_129S1SvImJ_P0094139	168 (aa)	-	-
MGP_129S1SvImJ_T0094138	-	289	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0094142	-	450	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0094140	-	314	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0094141	-	924	-	MGP_129S1SvImJ_P0094141	215 (aa)	-	-

Gene Model

Click here to download MGP_129S1SvImJ_G0035232's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0035232's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0035232	Pcbp4	76	41.538	MGP_129S1SvImJ_G0031748	-	51	41.538
MGP_129S1SvImJ_G0035232	Pcbp4	76	41.538	MGP_129S1SvImJ_G0031749	-	54	41.538
MGP_129S1SvImJ_G0035232	Pcbp4	73	32.558	MGP_129S1SvImJ_G0023949	Khsrp	54	34.091
MGP_129S1SvImJ_G0035232	Pcbp4	76	30.597	MGP_129S1SvImJ_G0018993	Igf2bp1	59	30.597
MGP_129S1SvImJ_G0035232	Pcbp4	73	31.111	MGP_129S1SvImJ_G0022666	Igf2bp2	62	31.111
MGP_129S1SvImJ_G0035232	Pcbp4	83	36.000	MGP_129S1SvImJ_G0025586	Fubp3	70	36.000
MGP_129S1SvImJ_G0035232	Pcbp4	51	37.363	MGP_129S1SvImJ_G0019714	Nova1	52	37.363
MGP_129S1SvImJ_G0035232	Pcbp4	98	66.321	MGP_129S1SvImJ_G0022415	Pcbp2	97	59.877
MGP_129S1SvImJ_G0035232	Pcbp4	86	31.361	MGP_129S1SvImJ_G0032452	-	73	31.361
MGP_129S1SvImJ_G0035232	Pcbp4	86	33.728	MGP_129S1SvImJ_G0020633	Hnrnpk	78	32.414
MGP_129S1SvImJ_G0035232	Pcbp4	96	66.055	MGP_129S1SvImJ_G0030978	Pcbp1	98	53.541
MGP_129S1SvImJ_G0035232	Pcbp4	93	70.652	MGP_129S1SvImJ_G0017390	Pcbp3	85	69.792
MGP_129S1SvImJ_G0035232	Pcbp4	74	34.524	MGP_129S1SvImJ_G0027988	Fubp1	72	34.524