EuRBPDB

Description

Ensembl ID: MGP_129S1SvImJ_G0035684 (Gene tree)
Gene ID: -
Gene Symbol: Smarca1
Alias: 5730494M04Rik|Snf2l
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Minus strand
Length: 78591 bases
Position: chrX:42926042-43004632
Accession: 1935127
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0096010	ResIII	PF04851.15	4.3e-12	1	1
MGP_129S1SvImJ_P0096009	ResIII	PF04851.15	1.1e-11	1	1
MGP_129S1SvImJ_P0096007	ResIII	PF04851.15	1.8e-11	1	1
MGP_129S1SvImJ_P0096006	ResIII	PF04851.15	1.8e-11	1	1
MGP_129S1SvImJ_P0096008	ResIII	PF04851.15	1.8e-11	1	1
MGP_129S1SvImJ_P0096006	DEAD	PF00270.29	1.2e-06	1	1
MGP_129S1SvImJ_P0096008	DEAD	PF00270.29	1.2e-06	1	1
MGP_129S1SvImJ_P0096007	DEAD	PF00270.29	1.3e-06	1	1
MGP_129S1SvImJ_P0096010	DEAD	PF00270.29	2.4e-06	1	1
MGP_129S1SvImJ_P0096009	DEAD	PF00270.29	3.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0096010	-	1965	-	MGP_129S1SvImJ_P0096010	381 (aa)	-	-
MGP_129S1SvImJ_T0096011	-	360	-	MGP_129S1SvImJ_P0096011	117 (aa)	-	-
MGP_129S1SvImJ_T0096012	-	409	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0096007	-	3991	-	MGP_129S1SvImJ_P0096007	1062 (aa)	-	-
MGP_129S1SvImJ_T0096006	-	4024	XM_006541563	MGP_129S1SvImJ_P0096006	1046 (aa)	XP_006541626	Q6PGB8
MGP_129S1SvImJ_T0096009	-	2304	-	MGP_129S1SvImJ_P0096009	768 (aa)	-	-
MGP_129S1SvImJ_T0096008	-	4798	-	MGP_129S1SvImJ_P0096008	1046 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0035684	Smarca1	61	32.031	MGP_129S1SvImJ_G0028618	Rad54l	66	33.267
MGP_129S1SvImJ_G0035684	Smarca1	71	30.490	MGP_129S1SvImJ_G0020671	Ercc6l2	82	30.353
MGP_129S1SvImJ_G0035684	Smarca1	72	45.247	MGP_129S1SvImJ_G0025096	Hells	65	47.410
MGP_129S1SvImJ_G0035684	Smarca1	68	31.488	MGP_129S1SvImJ_G0028054	Rad54b	66	31.229
MGP_129S1SvImJ_G0035684	Smarca1	75	43.101	MGP_129S1SvImJ_G0027641	Chd1l	62	44.000