EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0036044 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc5
Alias: C820015E17
Full Name: poly(A) binding protein%2C cytoplasmic 5
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Plus strand
Length: 3504 bases
Position: chrX:116789949-116793452
Accession: 2136401
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0097303	RRM_5	PF13893.6	7.2e-12	1	2
MGP_129S1SvImJ_P0097303	RRM_5	PF13893.6	7.2e-12	2	2
MGP_129S1SvImJ_P0097304	RRM_5	PF13893.6	7.2e-12	1	2
MGP_129S1SvImJ_P0097304	RRM_5	PF13893.6	7.2e-12	2	2
MGP_129S1SvImJ_P0097303	RRM_1	PF00076.22	1.1e-77	1	4
MGP_129S1SvImJ_P0097303	RRM_1	PF00076.22	1.1e-77	2	4
MGP_129S1SvImJ_P0097303	RRM_1	PF00076.22	1.1e-77	3	4
MGP_129S1SvImJ_P0097303	RRM_1	PF00076.22	1.1e-77	4	4
MGP_129S1SvImJ_P0097304	RRM_1	PF00076.22	1.1e-77	1	4
MGP_129S1SvImJ_P0097304	RRM_1	PF00076.22	1.1e-77	2	4
MGP_129S1SvImJ_P0097304	RRM_1	PF00076.22	1.1e-77	3	4
MGP_129S1SvImJ_P0097304	RRM_1	PF00076.22	1.1e-77	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0097303	-	2434	-	MGP_129S1SvImJ_P0097303	381 (aa)	-	Q8C7D3
MGP_129S1SvImJ_T0097304	-	2243	-	MGP_129S1SvImJ_P0097304	381 (aa)	-	-

Gene Model

Click here to download MGP_129S1SvImJ_G0036044's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0036044's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0036044	Pabpc5	96	61.111	MGP_129S1SvImJ_G0024369	Pabpc2	62	60.955
MGP_129S1SvImJ_G0036044	Pabpc5	96	56.944	MGP_129S1SvImJ_G0026834	Pabpc1l	64	57.022
MGP_129S1SvImJ_G0036044	Pabpc5	93	33.333	MGP_129S1SvImJ_G0030975	Tia1	84	34.247
MGP_129S1SvImJ_G0036044	Pabpc5	94	65.432	MGP_129S1SvImJ_G0028739	Pabpc4	100	68.841
MGP_129S1SvImJ_G0036044	Pabpc5	94	37.037	MGP_129S1SvImJ_G0028445	Elavl2	89	37.037
MGP_129S1SvImJ_G0036044	Pabpc5	95	58.445	MGP_129S1SvImJ_G0023139	Pabpc6	59	58.470
MGP_129S1SvImJ_G0036044	Pabpc5	95	64.463	MGP_129S1SvImJ_G0021796	Pabpc1	58	64.607
MGP_129S1SvImJ_G0036044	Pabpc5	63	34.483	MGP_129S1SvImJ_G0034902	Celf6	51	34.483
MGP_129S1SvImJ_G0036044	Pabpc5	96	57.967	MGP_129S1SvImJ_G0027190	Pabpc4l	97	57.865