EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AJ_G0017991 (Gene tree)
Gene ID: -
Gene Symbol: Ddx56
Alias: 2600001H07Rik|D11Ertd619e|NOH61|Noh61
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 56
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Minus strand
Length: 8851 bases
Position: chr11:3219335-3228185
Accession: 1277172
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0027938	ResIII	PF04851.15	9.5e-07	1	1
MGP_AJ_P0027938	DEAD	PF00270.29	6.9e-40	1	1
MGP_AJ_P0027940	DEAD	PF00270.29	5.8e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0027939	-	527	-	-	- (aa)	-	-
MGP_AJ_T0027938	-	1956	XM_011243731	MGP_AJ_P0027938	546 (aa)	XP_011242033	Q9D0R4
MGP_AJ_T0027941	-	621	-	-	- (aa)	-	-
MGP_AJ_T0027940	-	764	-	MGP_AJ_P0027940	237 (aa)	-	-

Gene Model

Click here to download MGP_AJ_G0017991's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AJ_G0017991's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0017991	Ddx56	95	31.687	MGP_AJ_G0034112	Ddx19b	73	30.025
MGP_AJ_G0017991	Ddx56	95	31.727	MGP_AJ_G0034111	Ddx19a	68	32.258
MGP_AJ_G0017991	Ddx56	80	33.493	MGP_AJ_G0018830	Ddx52	61	30.597
MGP_AJ_G0017991	Ddx56	94	32.627	MGP_AJ_G0033682	Ddx49	59	33.175
MGP_AJ_G0017991	Ddx56	66	30.366	MGP_AJ_G0035549	Ddx3x	52	30.000
MGP_AJ_G0017991	Ddx56	98	33.065	MGP_AJ_G0026873	Ddx27	53	31.019
MGP_AJ_G0017991	Ddx56	97	30.328	MGP_AJ_G0022640	Eif4a2	63	30.736
MGP_AJ_G0017991	Ddx56	99	35.887	MGP_AJ_G0031388	Ddx47	86	38.889
MGP_AJ_G0017991	Ddx56	61	32.051	MGP_AJ_G0033822	Ddx39	74	34.969
MGP_AJ_G0017991	Ddx56	82	50.000	MGP_AJ_G0019571	Ddx1	53	50.847
MGP_AJ_G0017991	Ddx56	66	30.789	MGP_AJ_G0016900	D1Pas1	52	30.159
MGP_AJ_G0017991	Ddx56	60	33.333	MGP_AJ_G0030861	-	75	33.333