EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AJ_G0018223 (Gene tree)
Gene ID: -
Gene Symbol: Zfp454
Alias: B230342N19
Full Name: zinc finger protein 454
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Minus strand
Length: 14919 bases
Position: chr11:48156829-48171747
Accession: 2679253
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0028861	zf-C2H2	PF00096.26	7.8e-63	1	11
MGP_AJ_P0028861	zf-C2H2	PF00096.26	7.8e-63	2	11
MGP_AJ_P0028861	zf-C2H2	PF00096.26	7.8e-63	3	11
MGP_AJ_P0028861	zf-C2H2	PF00096.26	7.8e-63	4	11
MGP_AJ_P0028861	zf-C2H2	PF00096.26	7.8e-63	5	11
MGP_AJ_P0028861	zf-C2H2	PF00096.26	7.8e-63	6	11
MGP_AJ_P0028861	zf-C2H2	PF00096.26	7.8e-63	7	11
MGP_AJ_P0028861	zf-C2H2	PF00096.26	7.8e-63	8	11
MGP_AJ_P0028861	zf-C2H2	PF00096.26	7.8e-63	9	11
MGP_AJ_P0028861	zf-C2H2	PF00096.26	7.8e-63	10	11
MGP_AJ_P0028861	zf-C2H2	PF00096.26	7.8e-63	11	11
MGP_AJ_P0028861	zf-met	PF12874.7	0.00059	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0028862	-	579	-	-	- (aa)	-	-
MGP_AJ_T0028863	-	722	-	MGP_AJ_P0028863	122 (aa)	-	-
MGP_AJ_T0028861	-	2119	XM_006533208	MGP_AJ_P0028861	536 (aa)	XP_006533271	Q5NCH5
MGP_AJ_T0028864	-	606	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_AJ_G0018223's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AJ_G0018223's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0018223	Zfp454	70	35.714	MGP_AJ_G0031832	Zfp574	88	37.500
MGP_AJ_G0018223	Zfp454	70	41.854	MGP_AJ_G0023218	Zscan10	75	44.554
MGP_AJ_G0018223	Zfp454	98	48.828	MGP_AJ_G0034123	Zfp1	99	48.828
MGP_AJ_G0018223	Zfp454	98	46.667	MGP_AJ_G0034459	Zfp872	99	46.667
MGP_AJ_G0018223	Zfp454	68	38.571	MGP_AJ_G0030801	Prdm5	78	38.571
MGP_AJ_G0018223	Zfp454	82	36.599	MGP_AJ_G0030671	Repin1	98	35.252
MGP_AJ_G0018223	Zfp454	75	42.982	MGP_AJ_G0024569	Zfp236	63	42.697
MGP_AJ_G0018223	Zfp454	87	48.199	MGP_AJ_G0032102	Zfp715	61	57.778
MGP_AJ_G0018223	Zfp454	99	43.396	MGP_AJ_G0033019	E430018J23Rik	89	44.019
MGP_AJ_G0018223	Zfp454	68	48.266	MGP_AJ_G0031904	Zfp974	88	47.645
MGP_AJ_G0018223	Zfp454	100	55.556	MGP_AJ_G0026427	Zfp661	98	55.405
MGP_AJ_G0018223	Zfp454	65	47.423	MGP_AJ_G0029473	Zbtb49	63	50.000
MGP_AJ_G0018223	Zfp454	98	42.508	MGP_AJ_G0026859	Zfp334	99	44.615
MGP_AJ_G0018223	Zfp454	99	53.604	MGP_AJ_G0021971	Zfp251	95	51.948
MGP_AJ_G0018223	Zfp454	100	49.851	MGP_AJ_G0023196	Zfp51	95	60.714
MGP_AJ_G0018223	Zfp454	99	49.315	MGP_AJ_G0023194	Zfp677	99	49.315
MGP_AJ_G0018223	Zfp454	65	36.493	MGP_AJ_G0031553	Zfp784	71	36.493
MGP_AJ_G0018223	Zfp454	99	56.818	MGP_AJ_G0032098	Zfp141	99	56.818
MGP_AJ_G0018223	Zfp454	86	52.000	MGP_AJ_G0020653	Rslcan18	87	52.000
MGP_AJ_G0018223	Zfp454	98	52.692	MGP_AJ_G0020654	Zfp759	100	52.692
MGP_AJ_G0018223	Zfp454	67	42.623	MGP_AJ_G0031550	Zfp865	80	36.486
MGP_AJ_G0018223	Zfp454	66	49.112	MGP_AJ_G0033747	Zfp709	88	49.112
MGP_AJ_G0018223	Zfp454	98	50.523	MGP_AJ_G0031802	Zfp94	97	50.523
MGP_AJ_G0018223	Zfp454	73	51.111	MGP_AJ_G0031800	Zfp93	99	50.696
MGP_AJ_G0018223	Zfp454	76	53.448	MGP_AJ_G0031801	Zfp61	60	66.667
MGP_AJ_G0018223	Zfp454	99	46.361	MGP_AJ_G0023214	Zfp945	99	46.479
MGP_AJ_G0018223	Zfp454	69	37.600	MGP_AJ_G0033966	Zfp319	91	37.989
MGP_AJ_G0018223	Zfp454	70	53.535	MGP_AJ_G0020235	Zkscan4	52	53.535
MGP_AJ_G0018223	Zfp454	69	39.130	MGP_AJ_G0018955	Zfp652	56	38.596
MGP_AJ_G0018223	Zfp454	67	51.309	MGP_AJ_G0031542	Zfp628	60	49.451
MGP_AJ_G0018223	Zfp454	65	42.424	MGP_AJ_G0029008	Zbtb17	55	43.322
MGP_AJ_G0018223	Zfp454	68	45.745	MGP_AJ_G0026897	Zfp64	73	35.125
MGP_AJ_G0018223	Zfp454	98	41.779	MGP_AJ_G0033748	Zfp882	99	44.110
MGP_AJ_G0018223	Zfp454	68	38.320	MGP_AJ_G0018319	Zfp672	90	42.029
MGP_AJ_G0018223	Zfp454	98	48.406	MGP_AJ_G0018368	Zfp867	82	49.583
MGP_AJ_G0018223	Zfp454	68	51.095	MGP_AJ_G0033015	Zfp768	51	50.523
MGP_AJ_G0018223	Zfp454	98	55.686	MGP_AJ_G0020619	Gm5141	96	55.814
MGP_AJ_G0018223	Zfp454	69	60.345	MGP_AJ_G0031148	Zfp637	80	55.208
MGP_AJ_G0018223	Zfp454	71	57.803	MGP_AJ_G0031967	Zfp420	98	59.532
MGP_AJ_G0018223	Zfp454	68	42.262	MGP_AJ_G0029808	Gfi1	100	45.794
MGP_AJ_G0018223	Zfp454	98	50.142	MGP_AJ_G0020671	Zfp748	100	50.142
MGP_AJ_G0018223	Zfp454	99	48.193	MGP_AJ_G0031797	Zfp114	99	48.193
MGP_AJ_G0018223	Zfp454	98	48.725	MGP_AJ_G0031795	Zfp112	72	57.143
MGP_AJ_G0018223	Zfp454	82	58.140	MGP_AJ_G0031796	Zfp235	79	58.140