EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AJ_G0019135 (Gene tree)
Gene ID: -
Gene Symbol: Rab5c
Alias: AI326010|Rab5C|Rabl
Full Name: RAB5C%2C member RAS oncogene family
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Minus strand
Length: 23601 bases
Position: chr11:99165669-99189269
Accession: 105306
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0032356	MMR_HSR1	PF01926.23	0.00021	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0032357	-	1967	-	MGP_AJ_P0032357	234 (aa)	-	-
MGP_AJ_T0032356	-	1915	XM_006532586	MGP_AJ_P0032356	216 (aa)	XP_006532649	P35278
MGP_AJ_T0032359	-	441	-	MGP_AJ_P0032359	34 (aa)	-	-
MGP_AJ_T0032358	-	412	-	MGP_AJ_P0032358	83 (aa)	-	-

Gene Model

Click here to download MGP_AJ_G0019135's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AJ_G0019135's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0019135	Rab5c	55	31.707	MGP_AJ_G0016500	Arl8a	62	31.707
MGP_AJ_G0019135	Rab5c	94	41.379	MGP_AJ_G0035173	Rab6b	98	41.379
MGP_AJ_G0019135	Rab5c	89	35.784	MGP_AJ_G0019824	Rab15	95	35.784
MGP_AJ_G0019135	Rab5c	98	40.845	MGP_AJ_G0019340	Rab37	95	40.845
MGP_AJ_G0019135	Rab5c	90	41.262	MGP_AJ_G0034923	Rab11a	88	49.630
MGP_AJ_G0019135	Rab5c	83	30.000	MGP_AJ_G0027648	Nras	99	33.333
MGP_AJ_G0019135	Rab5c	71	35.948	MGP_AJ_G0022200	Rabl2	67	35.948
MGP_AJ_G0019135	Rab5c	86	39.785	MGP_AJ_G0025627	Rab14	89	40.741
MGP_AJ_G0019135	Rab5c	89	43.590	MGP_AJ_G0018037	Rab1a	95	43.590
MGP_AJ_G0019135	Rab5c	77	42.442	MGP_AJ_G0030971	Rab7	90	49.296
MGP_AJ_G0019135	Rab5c	78	32.544	MGP_AJ_G0031454	Kras	98	30.102
MGP_AJ_G0019135	Rab5c	81	35.227	MGP_AJ_G0015886	Rab23	74	35.227
MGP_AJ_G0019135	Rab5c	73	31.875	MGP_AJ_G0018734	Rab34	62	31.875
MGP_AJ_G0019135	Rab5c	89	44.330	MGP_AJ_G0024659	Rab1b	96	44.330
MGP_AJ_G0019135	Rab5c	89	34.848	MGP_AJ_G0036235	Rab9	97	34.848
MGP_AJ_G0019135	Rab5c	81	33.702	MGP_AJ_G0033196	Hras	94	33.702
MGP_AJ_G0019135	Rab5c	75	36.585	MGP_AJ_G0035849	Rab39b	77	36.585
MGP_AJ_G0019135	Rab5c	81	44.000	MGP_AJ_G0032548	Rab6a	84	44.000
MGP_AJ_G0019135	Rab5c	89	37.113	MGP_AJ_G0029939	Rab35	96	37.436
MGP_AJ_G0019135	Rab5c	89	36.318	MGP_AJ_G0035677	Rab33a	85	36.318
MGP_AJ_G0019135	Rab5c	81	31.250	MGP_AJ_G0029322	Rheb	93	31.250
MGP_AJ_G0019135	Rab5c	78	42.012	MGP_AJ_G0032488	Rab30	83	42.012
MGP_AJ_G0019135	Rab5c	90	47.423	MGP_AJ_G0026926	Rab22a	98	47.423
MGP_AJ_G0019135	Rab5c	86	38.806	MGP_AJ_G0023946	Rab12	75	36.000
MGP_AJ_G0019135	Rab5c	75	48.447	MGP_AJ_G0023494	Rab11b	74	48.447
MGP_AJ_G0019135	Rab5c	89	41.089	MGP_AJ_G0027364	Rab25	93	41.089
MGP_AJ_G0019135	Rab5c	93	37.379	MGP_AJ_G0027158	Rab33b	89	37.379
MGP_AJ_G0019135	Rab5c	100	87.500	MGP_AJ_G0023847	Rab5a	100	87.500
MGP_AJ_G0019135	Rab5c	89	35.859	MGP_AJ_G0036087	Rab9b	97	35.859
MGP_AJ_G0019135	Rab5c	55	31.967	MGP_AJ_G0031071	Arl8b	62	31.967
MGP_AJ_G0019135	Rab5c	89	40.206	MGP_AJ_G0021251	Rab2b	90	40.206
MGP_AJ_G0019135	Rab5c	75	45.062	MGP_AJ_G0024094	Rab18	78	45.062
MGP_AJ_G0019135	Rab5c	90	38.974	MGP_AJ_G0027997	Rab2a	92	38.974
MGP_AJ_G0019135	Rab5c	78	32.544	MGP_AJ_G0031560	Rasl2-9	77	32.544
MGP_AJ_G0019135	Rab5c	73	35.625	MGP_AJ_G0017327	Rab36	60	35.625
MGP_AJ_G0019135	Rab5c	91	46.939	MGP_AJ_G0023937	Rab31	98	46.939