EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AJ_G0020235 (Gene tree)
Gene ID: -
Gene Symbol: Zkscan4
Alias: AI841875|Gm11272|OTTMUSG00000000421
Full Name: zinc finger with KRAB and SCAN domains 4
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Plus strand
Length: 6573 bases
Position: chr13:18334535-18341107
Accession: 3649412
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0036354	zf-C2H2	PF00096.26	8.8e-41	1	7
MGP_AJ_P0036354	zf-C2H2	PF00096.26	8.8e-41	2	7
MGP_AJ_P0036354	zf-C2H2	PF00096.26	8.8e-41	3	7
MGP_AJ_P0036354	zf-C2H2	PF00096.26	8.8e-41	4	7
MGP_AJ_P0036354	zf-C2H2	PF00096.26	8.8e-41	5	7
MGP_AJ_P0036354	zf-C2H2	PF00096.26	8.8e-41	6	7
MGP_AJ_P0036354	zf-C2H2	PF00096.26	8.8e-41	7	7
MGP_AJ_P0036354	zf-met	PF12874.7	1.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0036354	-	2398	-	MGP_AJ_P0036354	477 (aa)	-	Q5SZT6

Gene Model

Click here to download MGP_AJ_G0020235's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AJ_G0020235's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0020235	Zkscan4	53	45.852	MGP_AJ_G0018319	Zfp672	100	41.975
MGP_AJ_G0020235	Zkscan4	50	52.414	MGP_AJ_G0026859	Zfp334	68	52.414
MGP_AJ_G0020235	Zkscan4	54	61.184	MGP_AJ_G0031967	Zfp420	99	50.909
MGP_AJ_G0020235	Zkscan4	53	37.229	MGP_AJ_G0033966	Zfp319	87	37.229
MGP_AJ_G0020235	Zkscan4	60	46.099	MGP_AJ_G0018554	Bcl6b	51	46.099
MGP_AJ_G0020235	Zkscan4	50	48.372	MGP_AJ_G0031148	Zfp637	71	48.372
MGP_AJ_G0020235	Zkscan4	54	43.363	MGP_AJ_G0033019	E430018J23Rik	59	41.667
MGP_AJ_G0020235	Zkscan4	70	45.455	MGP_AJ_G0023194	Zfp677	89	45.455
MGP_AJ_G0020235	Zkscan4	53	43.404	MGP_AJ_G0020619	Gm5141	85	43.404
MGP_AJ_G0020235	Zkscan4	53	47.826	MGP_AJ_G0030801	Prdm5	78	47.826
MGP_AJ_G0020235	Zkscan4	64	55.435	MGP_AJ_G0026427	Zfp661	76	55.435
MGP_AJ_G0020235	Zkscan4	95	49.664	MGP_AJ_G0023218	Zscan10	98	43.564
MGP_AJ_G0020235	Zkscan4	52	53.535	MGP_AJ_G0018223	Zfp454	70	53.535
MGP_AJ_G0020235	Zkscan4	53	37.561	MGP_AJ_G0026897	Zfp64	70	37.561
MGP_AJ_G0020235	Zkscan4	50	49.057	MGP_AJ_G0033015	Zfp768	52	52.632
MGP_AJ_G0020235	Zkscan4	54	48.408	MGP_AJ_G0023214	Zfp945	92	46.330
MGP_AJ_G0020235	Zkscan4	50	41.518	MGP_AJ_G0029008	Zbtb17	56	41.518
MGP_AJ_G0020235	Zkscan4	52	47.973	MGP_AJ_G0031542	Zfp628	63	45.238
MGP_AJ_G0020235	Zkscan4	53	52.381	MGP_AJ_G0031832	Zfp574	66	49.057
MGP_AJ_G0020235	Zkscan4	50	43.379	MGP_AJ_G0031904	Zfp974	85	43.379
MGP_AJ_G0020235	Zkscan4	54	49.091	MGP_AJ_G0020654	Zfp759	88	45.622
MGP_AJ_G0020235	Zkscan4	54	47.857	MGP_AJ_G0030671	Repin1	95	47.857
MGP_AJ_G0020235	Zkscan4	65	47.845	MGP_AJ_G0031795	Zfp112	56	47.845
MGP_AJ_G0020235	Zkscan4	65	51.938	MGP_AJ_G0031796	Zfp235	74	51.938
MGP_AJ_G0020235	Zkscan4	53	51.327	MGP_AJ_G0031797	Zfp114	68	52.252
MGP_AJ_G0020235	Zkscan4	57	50.000	MGP_AJ_G0033747	Zfp709	85	50.000
MGP_AJ_G0020235	Zkscan4	54	47.032	MGP_AJ_G0033748	Zfp882	85	47.032
MGP_AJ_G0020235	Zkscan4	58	46.296	MGP_AJ_G0031550	Zfp865	78	36.199
MGP_AJ_G0020235	Zkscan4	61	46.023	MGP_AJ_G0031802	Zfp94	75	47.137
MGP_AJ_G0020235	Zkscan4	51	45.342	MGP_AJ_G0029473	Zbtb49	66	47.222
MGP_AJ_G0020235	Zkscan4	53	54.491	MGP_AJ_G0034123	Zfp1	75	54.491
MGP_AJ_G0020235	Zkscan4	54	52.000	MGP_AJ_G0031800	Zfp93	100	52.000
MGP_AJ_G0020235	Zkscan4	53	49.286	MGP_AJ_G0031801	Zfp61	58	49.286
MGP_AJ_G0020235	Zkscan4	51	51.695	MGP_AJ_G0021971	Zfp251	73	48.498
MGP_AJ_G0020235	Zkscan4	67	53.289	MGP_AJ_G0023196	Zfp51	99	53.289
MGP_AJ_G0020235	Zkscan4	56	46.457	MGP_AJ_G0020653	Rslcan18	74	45.455
MGP_AJ_G0020235	Zkscan4	52	47.674	MGP_AJ_G0024569	Zfp236	61	47.674
MGP_AJ_G0020235	Zkscan4	50	45.833	MGP_AJ_G0018368	Zfp867	77	45.833
MGP_AJ_G0020235	Zkscan4	54	45.133	MGP_AJ_G0032102	Zfp715	71	45.133
MGP_AJ_G0020235	Zkscan4	53	49.286	MGP_AJ_G0032098	Zfp141	60	48.361