EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AJ_G0021288 (Gene tree)
Gene ID: -
Gene Symbol: Pabpn1
Alias: PAB2|Pab2|Pabp2|Pabp3|mPABII|poly(A) binding protein II
Full Name: poly(A) binding protein%2C nuclear 1
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Plus strand
Length: 6434 bases
Position: chr14:47910727-47917160
Accession: 1859158
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0039432	RRM_1	PF00076.22	3.8e-15	1	1
MGP_AJ_P0039437	RRM_1	PF00076.22	4.8e-15	1	1
MGP_AJ_P0039436	RRM_1	PF00076.22	1.3e-14	1	1
MGP_AJ_P0039433	RRM_1	PF00076.22	1.4e-14	1	1
MGP_AJ_P0039434	RRM_1	PF00076.22	1.5e-14	1	1
MGP_AJ_P0039438	RRM_1	PF00076.22	8.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0039438	-	939	-	MGP_AJ_P0039438	42 (aa)	-	-
MGP_AJ_T0039437	-	700	-	MGP_AJ_P0039437	178 (aa)	-	-
MGP_AJ_T0039436	-	2528	-	MGP_AJ_P0039436	292 (aa)	-	-
MGP_AJ_T0039435	-	826	-	MGP_AJ_P0039435	73 (aa)	-	-
MGP_AJ_T0039434	-	1777	-	MGP_AJ_P0039434	319 (aa)	-	-
MGP_AJ_T0039433	-	1030	-	MGP_AJ_P0039433	302 (aa)	-	-
MGP_AJ_T0039432	-	680	XM_006519272	MGP_AJ_P0039432	164 (aa)	XP_006519335	Q8CCS6

Gene Model

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Protein-Protein Interaction (PPI)

Clik here to download MGP_AJ_G0021288's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0021288	Pabpn1	93	61.538	MGP_AJ_G0034215	Pabpn1l	51	55.102
MGP_AJ_G0021288	Pabpn1	100	100.000	MGP_AJ_G0021287	Gm20521	57	100.000