EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AJ_G0021356 (Gene tree)
Gene ID: -
Gene Symbol: Pspc1
Alias: 5730470C09Rik|AI327109|AI449052|PSP1|Psp1
Full Name: paraspeckle protein 1
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Minus strand
Length: 56751 bases
Position: chr14:49808071-49864821
Accession: 1913895
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0039642	RRM_1	PF00076.22	3.5e-32	1	2
MGP_AJ_P0039642	RRM_1	PF00076.22	3.5e-32	2	2
MGP_AJ_P0039641	RRM_1	PF00076.22	4.9e-32	1	2
MGP_AJ_P0039641	RRM_1	PF00076.22	4.9e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0039641	-	2383	-	MGP_AJ_P0039641	523 (aa)	-	Q8R326
MGP_AJ_T0039642	-	2863	-	MGP_AJ_P0039642	466 (aa)	-	-
MGP_AJ_T0039643	-	528	-	-	- (aa)	-	-
MGP_AJ_T0039644	-	601	-	MGP_AJ_P0039644	58 (aa)	-	-

Gene Model

Click here to download MGP_AJ_G0021356's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AJ_G0021356's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0021356	Pspc1	84	71.429	MGP_AJ_G0028749	Sfpq	55	65.891
MGP_AJ_G0021356	Pspc1	84	67.347	MGP_AJ_G0035946	Nono	80	66.230
MGP_AJ_G0021356	Pspc1	66	44.737	MGP_AJ_G0024638	Rbm4b	50	44.737
MGP_AJ_G0021356	Pspc1	69	41.304	MGP_AJ_G0017464	Cirbp	68	34.247