EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AJ_G0021757 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc1
Alias: PABP|Pabp1|PabpI|Pabpl1|ePAB
Full Name: poly(A) binding protein%2C cytoplasmic 1
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Minus strand
Length: 16040 bases
Position: chr15:33688735-33704774
Accession: 1349722
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0040768	PABP	PF00658.18	8.8e-33	1	1
MGP_AJ_P0040767	PABP	PF00658.18	7.5e-32	1	1
MGP_AJ_P0040767	RRM_5	PF13893.6	2.4e-08	1	2
MGP_AJ_P0040767	RRM_5	PF13893.6	2.4e-08	2	2
MGP_AJ_P0040767	RRM_1	PF00076.22	1.4e-90	1	4
MGP_AJ_P0040767	RRM_1	PF00076.22	1.4e-90	2	4
MGP_AJ_P0040767	RRM_1	PF00076.22	1.4e-90	3	4
MGP_AJ_P0040767	RRM_1	PF00076.22	1.4e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0040769	-	725	-	-	- (aa)	-	-
MGP_AJ_T0040768	-	524	-	MGP_AJ_P0040768	117 (aa)	-	-
MGP_AJ_T0040767	-	2817	XM_011245339	MGP_AJ_P0040767	636 (aa)	XP_011243641	P29341
MGP_AJ_T0040770	-	632	-	-	- (aa)	-	-
MGP_AJ_T0040771	-	866	-	-	- (aa)	-	-
MGP_AJ_T0040772	-	747	-	-	- (aa)	-	-
MGP_AJ_T0040773	-	2889	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_AJ_G0021757's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AJ_G0021757's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0021757	Pabpc1	59	67.493	MGP_AJ_G0027150	Pabpc4l	97	69.277
MGP_AJ_G0021757	Pabpc1	58	36.145	MGP_AJ_G0028539	Elavl4	88	36.145
MGP_AJ_G0021757	Pabpc1	58	64.607	MGP_AJ_G0036025	Pabpc5	95	64.463
MGP_AJ_G0021757	Pabpc1	98	61.635	MGP_AJ_G0026800	Pabpc1l	99	61.478
MGP_AJ_G0021757	Pabpc1	58	34.667	MGP_AJ_G0029964	Rbm19	62	34.667
MGP_AJ_G0021757	Pabpc1	56	34.783	MGP_AJ_G0033065	Tial1	94	31.008
MGP_AJ_G0021757	Pabpc1	58	37.349	MGP_AJ_G0028407	Elavl2	89	37.349
MGP_AJ_G0021757	Pabpc1	99	80.186	MGP_AJ_G0023107	Pabpc6	99	80.341
MGP_AJ_G0021757	Pabpc1	89	59.850	MGP_AJ_G0028021	-	95	58.458
MGP_AJ_G0021757	Pabpc1	100	80.346	MGP_AJ_G0024336	Pabpc2	100	80.346
MGP_AJ_G0021757	Pabpc1	51	34.884	MGP_AJ_G0025309	Celf2	57	35.714
MGP_AJ_G0021757	Pabpc1	58	36.145	MGP_AJ_G0034452	Elavl3	92	36.145
MGP_AJ_G0021757	Pabpc1	52	39.759	MGP_AJ_G0017538	Celf5	71	39.759
MGP_AJ_G0021757	Pabpc1	57	32.450	MGP_AJ_G0033314	Elavl1	95	32.450
MGP_AJ_G0021757	Pabpc1	57	38.095	MGP_AJ_G0030941	Tia1	87	38.095