EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AJ_G0023107 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc6
Alias: 4932702K14Rik|AI428050|Pabpc3
Full Name: poly(A) binding protein%2C cytoplasmic 6
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Minus strand
Length: 3208 bases
Position: chr17:7164545-7167752
Accession: 1914793
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0045504	PABP	PF00658.18	1.4e-26	1	1
MGP_AJ_P0045504	RRM_5	PF13893.6	4.3e-07	1	1
MGP_AJ_P0045504	RRM_1	PF00076.22	1.9e-89	1	4
MGP_AJ_P0045504	RRM_1	PF00076.22	1.9e-89	2	4
MGP_AJ_P0045504	RRM_1	PF00076.22	1.9e-89	3	4
MGP_AJ_P0045504	RRM_1	PF00076.22	1.9e-89	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0045504	-	3208	-	MGP_AJ_P0045504	643 (aa)	-	Q9D4E6

Gene Model

Click here to download MGP_AJ_G0023107's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AJ_G0023107's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0023107	Pabpc6	57	34.667	MGP_AJ_G0029964	Rbm19	70	34.667
MGP_AJ_G0023107	Pabpc6	60	32.468	MGP_AJ_G0028539	Elavl4	88	32.468
MGP_AJ_G0023107	Pabpc6	51	34.211	MGP_AJ_G0025309	Celf2	57	34.211
MGP_AJ_G0023107	Pabpc6	99	80.341	MGP_AJ_G0021757	Pabpc1	99	80.186
MGP_AJ_G0023107	Pabpc6	97	56.625	MGP_AJ_G0026800	Pabpc1l	99	56.467
MGP_AJ_G0023107	Pabpc6	64	39.062	MGP_AJ_G0034883	Celf6	77	39.062
MGP_AJ_G0023107	Pabpc6	60	37.349	MGP_AJ_G0028407	Elavl2	90	37.349
MGP_AJ_G0023107	Pabpc6	59	58.470	MGP_AJ_G0036025	Pabpc5	95	58.445
MGP_AJ_G0023107	Pabpc6	53	35.526	MGP_AJ_G0026098	Celf1	52	35.526
MGP_AJ_G0023107	Pabpc6	89	52.088	MGP_AJ_G0028021	-	95	52.088
MGP_AJ_G0023107	Pabpc6	99	70.186	MGP_AJ_G0024336	Pabpc2	99	69.876
MGP_AJ_G0023107	Pabpc6	61	36.145	MGP_AJ_G0034452	Elavl3	92	36.145
MGP_AJ_G0023107	Pabpc6	72	36.585	MGP_AJ_G0027512	Celf3	80	37.500
MGP_AJ_G0023107	Pabpc6	56	34.014	MGP_AJ_G0033065	Tial1	94	31.783
MGP_AJ_G0023107	Pabpc6	62	36.842	MGP_AJ_G0024174	Celf4	62	36.842
MGP_AJ_G0023107	Pabpc6	59	34.091	MGP_AJ_G0035381	Rbms3	77	33.708
MGP_AJ_G0023107	Pabpc6	58	36.905	MGP_AJ_G0030941	Tia1	96	36.905
MGP_AJ_G0023107	Pabpc6	58	64.497	MGP_AJ_G0027150	Pabpc4l	98	64.497