EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AJ_G0023592 (Gene tree)
Gene ID: -
Gene Symbol: Ddx39b
Alias: 0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh|Uap56
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Plus strand
Length: 11700 bases
Position: chr17:34211890-34223589
Accession: 99240
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0047387	DEAD	PF00270.29	3.4e-14	1	1
MGP_AJ_P0047388	DEAD	PF00270.29	3.4e-14	1	1
MGP_AJ_P0047390	DEAD	PF00270.29	3.4e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0047387	-	1432	-	MGP_AJ_P0047387	327 (aa)	-	Q9Z1N5
MGP_AJ_T0047388	-	2543	-	MGP_AJ_P0047388	327 (aa)	-	-
MGP_AJ_T0047389	-	741	-	-	- (aa)	-	-
MGP_AJ_T0047390	-	1463	-	MGP_AJ_P0047390	327 (aa)	-	-

Gene Model

Click here to download MGP_AJ_G0023592's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AJ_G0023592's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0023592	Ddx39b	80	43.820	MGP_AJ_G0019446	Eif4a3	65	43.820
MGP_AJ_G0023592	Ddx39b	77	39.362	MGP_AJ_G0033682	Ddx49	64	39.362
MGP_AJ_G0023592	Ddx39b	68	47.872	MGP_AJ_G0022640	Eif4a2	63	47.872
MGP_AJ_G0023592	Ddx39b	84	35.652	MGP_AJ_G0034112	Ddx19b	59	35.652
MGP_AJ_G0023592	Ddx39b	78	39.259	MGP_AJ_G0031388	Ddx47	85	32.468
MGP_AJ_G0023592	Ddx39b	100	91.053	MGP_AJ_G0033822	Ddx39	78	91.053
MGP_AJ_G0023592	Ddx39b	80	32.370	MGP_AJ_G0034514	Ddx25	82	32.402