EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AJ_G0024336 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc2
Alias: Pabp|Pabp+|Pabp2
Full Name: poly(A) binding protein%2C cytoplasmic 2
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Plus strand
Length: 2586 bases
Position: chr18:36993838-36996423
Accession: 1349723
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0049539	PABP	PF00658.18	1.8e-21	1	1
MGP_AJ_P0049539	RRM_5	PF13893.6	8.5e-10	1	2
MGP_AJ_P0049539	RRM_5	PF13893.6	8.5e-10	2	2
MGP_AJ_P0049539	RRM_1	PF00076.22	2.1e-86	1	4
MGP_AJ_P0049539	RRM_1	PF00076.22	2.1e-86	2	4
MGP_AJ_P0049539	RRM_1	PF00076.22	2.1e-86	3	4
MGP_AJ_P0049539	RRM_1	PF00076.22	2.1e-86	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0049539	-	2586	-	MGP_AJ_P0049539	628 (aa)	-	Q62029

Gene Model

Click here to download MGP_AJ_G0024336's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AJ_G0024336's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0024336	Pabpc2	99	69.876	MGP_AJ_G0023107	Pabpc6	99	70.186
MGP_AJ_G0024336	Pabpc2	57	35.443	MGP_AJ_G0030941	Tia1	95	33.835
MGP_AJ_G0024336	Pabpc2	59	36.145	MGP_AJ_G0028407	Elavl2	89	36.145
MGP_AJ_G0024336	Pabpc2	59	34.667	MGP_AJ_G0029964	Rbm19	70	34.667
MGP_AJ_G0024336	Pabpc2	59	34.940	MGP_AJ_G0028539	Elavl4	88	34.940
MGP_AJ_G0024336	Pabpc2	100	80.346	MGP_AJ_G0021757	Pabpc1	100	80.346
MGP_AJ_G0024336	Pabpc2	50	35.036	MGP_AJ_G0033065	Tial1	92	32.500
MGP_AJ_G0024336	Pabpc2	62	60.955	MGP_AJ_G0036025	Pabpc5	96	61.111
MGP_AJ_G0024336	Pabpc2	63	38.554	MGP_AJ_G0017538	Celf5	98	38.554
MGP_AJ_G0024336	Pabpc2	61	34.940	MGP_AJ_G0034452	Elavl3	90	34.940
MGP_AJ_G0024336	Pabpc2	89	54.987	MGP_AJ_G0028021	-	95	54.987
MGP_AJ_G0024336	Pabpc2	61	64.167	MGP_AJ_G0027150	Pabpc4l	95	68.098
MGP_AJ_G0024336	Pabpc2	98	56.938	MGP_AJ_G0026800	Pabpc1l	99	56.938