EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AJ_G0026416 (Gene tree)
Gene ID: -
Gene Symbol: Snrnp200
Alias: A330064G03Rik|Ascc3l1|BC011390|HELIC2|Kiaa0788|U5-200-KD|U5-200KD
Full Name: small nuclear ribonucleoprotein 200 (U5)
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Plus strand
Length: 32162 bases
Position: chr2:125192186-125224347
Accession: 2444401
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0057502	ResIII	PF04851.15	3.1e-25	1	2
MGP_AJ_P0057502	ResIII	PF04851.15	3.1e-25	2	2
MGP_AJ_P0057502	DEAD	PF00270.29	4.1e-52	1	2
MGP_AJ_P0057502	DEAD	PF00270.29	4.1e-52	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0057503	-	593	-	-	- (aa)	-	-
MGP_AJ_T0057502	-	6745	-	MGP_AJ_P0057502	2136 (aa)	-	-
MGP_AJ_T0057501	-	2929	-	-	- (aa)	-	-
MGP_AJ_T0057505	-	741	-	-	- (aa)	-	-
MGP_AJ_T0057504	-	722	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_AJ_G0026416's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AJ_G0026416's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0026416	Snrnp200	86	42.051	MGP_AJ_G0017188	Ascc3	81	44.301
MGP_AJ_G0026416	Snrnp200	76	32.413	MGP_AJ_G0029796	Hfm1	59	32.413