EuRBPDB

Description

Ensembl ID: MGP_AJ_G0026726 (Gene tree)
Gene ID: -
Gene Symbol: Rbm39
Alias: 1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|Caper|Caper alpha|R75070|Rnpc2|caper
Full Name: RNA binding motif protein 39
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Minus strand
Length: 34587 bases
Position: chr2:154622524-154657110
Accession: 2157953
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0058750	RRM_1	PF00076.22	1.2e-41	1	2
MGP_AJ_P0058750	RRM_1	PF00076.22	1.2e-41	2	2
MGP_AJ_P0058751	RRM_1	PF00076.22	1.7e-41	1	2
MGP_AJ_P0058751	RRM_1	PF00076.22	1.7e-41	2	2
MGP_AJ_P0058752	RRM_1	PF00076.22	1.7e-41	1	2
MGP_AJ_P0058752	RRM_1	PF00076.22	1.7e-41	2	2
MGP_AJ_P0058756	RRM_1	PF00076.22	2.2e-22	1	1
MGP_AJ_P0058757	RRM_1	PF00076.22	9.4e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0058774	-	715	-	-	- (aa)	-	-
MGP_AJ_T0058759	-	546	-	-	- (aa)	-	-
MGP_AJ_T0058758	-	695	-	-	- (aa)	-	-
MGP_AJ_T0058771	-	672	-	-	- (aa)	-	-
MGP_AJ_T0058770	-	667	-	MGP_AJ_P0058770	38 (aa)	-	-
MGP_AJ_T0058773	-	1008	-	-	- (aa)	-	-
MGP_AJ_T0058772	-	699	-	MGP_AJ_P0058772	40 (aa)	-	-
MGP_AJ_T0058753	-	2744	-	MGP_AJ_P0058753	415 (aa)	-	-
MGP_AJ_T0058752	-	2711	-	MGP_AJ_P0058752	524 (aa)	-	-
MGP_AJ_T0058751	-	2580	-	MGP_AJ_P0058751	524 (aa)	-	-
MGP_AJ_T0058750	-	2810	XM_006498832	MGP_AJ_P0058750	530 (aa)	XP_006498895	Q8VH51
MGP_AJ_T0058757	-	1090	-	MGP_AJ_P0058757	273 (aa)	-	-
MGP_AJ_T0058756	-	931	-	MGP_AJ_P0058756	310 (aa)	-	-
MGP_AJ_T0058755	-	2127	-	MGP_AJ_P0058755	47 (aa)	-	-
MGP_AJ_T0058754	-	2120	-	MGP_AJ_P0058754	40 (aa)	-	-
MGP_AJ_T0058762	-	497	-	-	- (aa)	-	-
MGP_AJ_T0058763	-	711	-	-	- (aa)	-	-
MGP_AJ_T0058760	-	1456	-	-	- (aa)	-	-
MGP_AJ_T0058761	-	754	-	MGP_AJ_P0058761	156 (aa)	-	-
MGP_AJ_T0058766	-	593	-	MGP_AJ_P0058766	39 (aa)	-	-
MGP_AJ_T0058767	-	707	-	-	- (aa)	-	-
MGP_AJ_T0058764	-	685	-	-	- (aa)	-	-
MGP_AJ_T0058765	-	707	-	MGP_AJ_P0058765	40 (aa)	-	-
MGP_AJ_T0058768	-	585	-	MGP_AJ_P0058768	62 (aa)	-	-
MGP_AJ_T0058769	-	743	-	MGP_AJ_P0058769	40 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0026726	Rbm39	52	34.483	MGP_AJ_G0017470	Dazap1	94	34.483