EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AJ_G0026800 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc1l
Alias: 1810053B01Rik|Epab|ePAB
Full Name: poly(A) binding protein%2C cytoplasmic 1-like
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Plus strand
Length: 27581 bases
Position: chr2:162547738-162575318
Accession: 1922908
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0059115	PABP	PF00658.18	1.8e-23	1	1
MGP_AJ_P0059115	RRM_5	PF13893.6	3.2e-17	1	3
MGP_AJ_P0059115	RRM_5	PF13893.6	3.2e-17	2	3
MGP_AJ_P0059115	RRM_5	PF13893.6	3.2e-17	3	3
MGP_AJ_P0059115	RRM_1	PF00076.22	3.5e-90	1	4
MGP_AJ_P0059115	RRM_1	PF00076.22	3.5e-90	2	4
MGP_AJ_P0059115	RRM_1	PF00076.22	3.5e-90	3	4
MGP_AJ_P0059115	RRM_1	PF00076.22	3.5e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0059116	-	617	-	-	- (aa)	-	-
MGP_AJ_T0059117	-	438	-	-	- (aa)	-	-
MGP_AJ_T0059115	-	2354	XM_006499825	MGP_AJ_P0059115	607 (aa)	XP_006499888	A2A5N3
MGP_AJ_T0059118	-	750	-	-	- (aa)	-	-
MGP_AJ_T0059119	-	328	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_AJ_G0026800's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AJ_G0026800's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0026800	Pabpc1l	64	34.940	MGP_AJ_G0028407	Elavl2	92	34.940
MGP_AJ_G0026800	Pabpc1l	59	60.736	MGP_AJ_G0027150	Pabpc4l	95	60.736
MGP_AJ_G0026800	Pabpc1l	59	38.095	MGP_AJ_G0030941	Tia1	87	38.095
MGP_AJ_G0026800	Pabpc1l	59	30.818	MGP_AJ_G0035381	Rbms3	77	30.818
MGP_AJ_G0026800	Pabpc1l	62	33.735	MGP_AJ_G0028539	Elavl4	89	33.735
MGP_AJ_G0026800	Pabpc1l	63	38.889	MGP_AJ_G0034452	Elavl3	59	30.488
MGP_AJ_G0026800	Pabpc1l	99	56.938	MGP_AJ_G0024336	Pabpc2	98	56.938
MGP_AJ_G0026800	Pabpc1l	60	35.870	MGP_AJ_G0017538	Celf5	70	32.812
MGP_AJ_G0026800	Pabpc1l	90	50.518	MGP_AJ_G0028021	-	95	50.518
MGP_AJ_G0026800	Pabpc1l	99	56.467	MGP_AJ_G0023107	Pabpc6	97	56.625
MGP_AJ_G0026800	Pabpc1l	53	34.884	MGP_AJ_G0025309	Celf2	57	34.884
MGP_AJ_G0026800	Pabpc1l	56	30.864	MGP_AJ_G0020581	Hnrnpa0	50	31.613
MGP_AJ_G0026800	Pabpc1l	57	34.118	MGP_AJ_G0027512	Celf3	67	32.857
MGP_AJ_G0026800	Pabpc1l	60	35.484	MGP_AJ_G0029964	Rbm19	72	36.066
MGP_AJ_G0026800	Pabpc1l	99	61.478	MGP_AJ_G0021757	Pabpc1	98	61.635
MGP_AJ_G0026800	Pabpc1l	53	39.759	MGP_AJ_G0017464	Cirbp	91	39.759
MGP_AJ_G0026800	Pabpc1l	64	57.022	MGP_AJ_G0036025	Pabpc5	96	56.944