EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AJ_G0026919 (Gene tree)
Gene ID: -
Gene Symbol: Rbm38
Alias: Rnpc1|Seb4|Seb4l
Full Name: RNA binding motif protein 38
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Plus strand
Length: 12827 bases
Position: chr2:171729027-171741853
Accession: 1889294
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0059590	RRM_1	PF00076.22	1.1e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0059592	-	440	-	MGP_AJ_P0059592	125 (aa)	-	-
MGP_AJ_T0059593	-	1527	-	-	- (aa)	-	-
MGP_AJ_T0059590	-	714	-	MGP_AJ_P0059590	237 (aa)	-	-
MGP_AJ_T0059591	-	620	-	MGP_AJ_P0059591	107 (aa)	-	-
MGP_AJ_T0059589	-	2280	-	-	- (aa)	-	-
MGP_AJ_T0059588	-	936	XM_006499923	MGP_AJ_P0059588	78 (aa)	XP_006499986	Q62176

Gene Model

Click here to download MGP_AJ_G0026919's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AJ_G0026919's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0026919	Rbm38	66	46.809	MGP_AJ_G0029933	Msi1	61	51.064
MGP_AJ_G0026919	Rbm38	70	38.095	MGP_AJ_G0018892	Msi2	80	34.074
MGP_AJ_G0026919	Rbm38	74	38.043	MGP_AJ_G0017464	Cirbp	78	40.476
MGP_AJ_G0026919	Rbm38	77	35.484	MGP_AJ_G0017470	Dazap1	86	35.802
MGP_AJ_G0026919	Rbm38	63	91.837	MGP_AJ_G0020466	Rbm24	100	68.067
MGP_AJ_G0026919	Rbm38	51	36.364	MGP_AJ_G0029746	Hnrnpd	51	36.364