EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AJ_G0027150 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc4l
Alias: C330050A14Rik|EG241989
Full Name: poly(A) binding protein%2C cytoplasmic 4-like
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Minus strand
Length: 6449 bases
Position: chr3:43467109-43473557
Accession: 3643087
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0060733	RRM_5	PF13893.6	2.3e-13	1	3
MGP_AJ_P0060733	RRM_5	PF13893.6	2.3e-13	2	3
MGP_AJ_P0060733	RRM_5	PF13893.6	2.3e-13	3	3
MGP_AJ_P0060734	RRM_5	PF13893.6	2.3e-13	1	3
MGP_AJ_P0060734	RRM_5	PF13893.6	2.3e-13	2	3
MGP_AJ_P0060734	RRM_5	PF13893.6	2.3e-13	3	3
MGP_AJ_P0060733	RRM_1	PF00076.22	2e-82	1	4
MGP_AJ_P0060733	RRM_1	PF00076.22	2e-82	2	4
MGP_AJ_P0060733	RRM_1	PF00076.22	2e-82	3	4
MGP_AJ_P0060733	RRM_1	PF00076.22	2e-82	4	4
MGP_AJ_P0060734	RRM_1	PF00076.22	2e-82	1	4
MGP_AJ_P0060734	RRM_1	PF00076.22	2e-82	2	4
MGP_AJ_P0060734	RRM_1	PF00076.22	2e-82	3	4
MGP_AJ_P0060734	RRM_1	PF00076.22	2e-82	4	4
MGP_AJ_P0060735	RRM_1	PF00076.22	1.8e-40	1	2
MGP_AJ_P0060735	RRM_1	PF00076.22	1.8e-40	2	2
MGP_AJ_P0060736	RRM_1	PF00076.22	2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0060736	-	467	-	MGP_AJ_P0060736	50 (aa)	-	-
MGP_AJ_T0060734	-	5220	-	MGP_AJ_P0060734	370 (aa)	-	-
MGP_AJ_T0060735	-	723	-	MGP_AJ_P0060735	172 (aa)	-	-
MGP_AJ_T0060733	-	5254	XM_006500774	MGP_AJ_P0060733	370 (aa)	XP_006500837	A0A0A6YWT2

Gene Model

Click here to download MGP_AJ_G0027150's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AJ_G0027150's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0027150	Pabpc4l	96	36.145	MGP_AJ_G0034452	Elavl3	90	36.145
MGP_AJ_G0027150	Pabpc4l	97	57.865	MGP_AJ_G0036025	Pabpc5	96	57.967
MGP_AJ_G0027150	Pabpc4l	52	31.461	MGP_AJ_G0028909	Srsf10	50	32.500
MGP_AJ_G0027150	Pabpc4l	94	30.464	MGP_AJ_G0033314	Elavl1	91	30.464
MGP_AJ_G0027150	Pabpc4l	98	64.497	MGP_AJ_G0023107	Pabpc6	58	64.497
MGP_AJ_G0027150	Pabpc4l	96	30.065	MGP_AJ_G0028539	Elavl4	86	30.065
MGP_AJ_G0027150	Pabpc4l	83	34.286	MGP_AJ_G0035518	Rbm3	90	35.385
MGP_AJ_G0027150	Pabpc4l	97	69.277	MGP_AJ_G0021757	Pabpc1	59	67.493
MGP_AJ_G0027150	Pabpc4l	95	68.098	MGP_AJ_G0024336	Pabpc2	61	64.167
MGP_AJ_G0027150	Pabpc4l	89	31.875	MGP_AJ_G0028827	Trnau1ap	88	34.211
MGP_AJ_G0027150	Pabpc4l	95	30.539	MGP_AJ_G0030941	Tia1	95	30.000
MGP_AJ_G0027150	Pabpc4l	96	34.940	MGP_AJ_G0028407	Elavl2	89	34.940
MGP_AJ_G0027150	Pabpc4l	94	33.333	MGP_AJ_G0033065	Tial1	99	31.618
MGP_AJ_G0027150	Pabpc4l	95	60.736	MGP_AJ_G0026800	Pabpc1l	59	60.736