EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AJ_G0028297 (Gene tree)
Gene ID: -
Gene Symbol: Ptbp3
Alias: 5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1
Full Name: polypyrimidine tract binding protein 3
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Minus strand
Length: 76067 bases
Position: chr4:56133183-56209249
Accession: 1923334
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0065946	RRM_5	PF13893.6	1.1e-61	1	3
MGP_AJ_P0065946	RRM_5	PF13893.6	1.1e-61	2	3
MGP_AJ_P0065946	RRM_5	PF13893.6	1.1e-61	3	3
MGP_AJ_P0065945	RRM_5	PF13893.6	1.2e-61	1	3
MGP_AJ_P0065945	RRM_5	PF13893.6	1.2e-61	2	3
MGP_AJ_P0065945	RRM_5	PF13893.6	1.2e-61	3	3
MGP_AJ_P0065948	RRM_5	PF13893.6	1.3e-47	1	1
MGP_AJ_P0065951	RRM_5	PF13893.6	7.2e-06	1	1
MGP_AJ_P0065946	RRM_1	PF00076.22	2.1e-31	1	3
MGP_AJ_P0065946	RRM_1	PF00076.22	2.1e-31	2	3
MGP_AJ_P0065946	RRM_1	PF00076.22	2.1e-31	3	3
MGP_AJ_P0065945	RRM_1	PF00076.22	2.2e-31	1	3
MGP_AJ_P0065945	RRM_1	PF00076.22	2.2e-31	2	3
MGP_AJ_P0065945	RRM_1	PF00076.22	2.2e-31	3	3
MGP_AJ_P0065951	RRM_1	PF00076.22	2.8e-11	1	1
MGP_AJ_P0065948	RRM_1	PF00076.22	3.9e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0065951	-	550	-	MGP_AJ_P0065951	146 (aa)	-	-
MGP_AJ_T0065947	-	669	-	-	- (aa)	-	-
MGP_AJ_T0065948	-	566	-	MGP_AJ_P0065948	188 (aa)	-	-
MGP_AJ_T0065949	-	1286	-	MGP_AJ_P0065949	45 (aa)	-	-
MGP_AJ_T0065952	-	447	-	-	- (aa)	-	-
MGP_AJ_T0065946	-	3409	-	MGP_AJ_P0065946	551 (aa)	-	-
MGP_AJ_T0065950	-	558	-	MGP_AJ_P0065950	41 (aa)	-	-
MGP_AJ_T0065953	-	606	-	MGP_AJ_P0065953	104 (aa)	-	-
MGP_AJ_T0065945	-	6677	XM_006537851	MGP_AJ_P0065945	554 (aa)	XP_006537914	Q8BHD7

Gene Model

Click here to download MGP_AJ_G0028297's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AJ_G0028297's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0028297	Ptbp3	100	77.379	MGP_AJ_G0017441	Ptbp1	100	78.136
MGP_AJ_G0028297	Ptbp3	91	78.195	MGP_AJ_G0027784	Ptbp2	99	69.835
MGP_AJ_G0028297	Ptbp3	83	35.537	MGP_AJ_G0031940	Hnrnpl	55	36.207