EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AJ_G0028539 (Gene tree)
Gene ID: -
Gene Symbol: Elavl4
Alias: Elav|Hud|PNEM
Full Name: ELAV (embryonic lethal%2C abnormal vision%2C Drosophila)-like 4 (Hu antigen D)
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Minus strand
Length: 145418 bases
Position: chr4:107001899-107147316
Accession: 107427
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0067012	RRM_5	PF13893.6	2.8e-13	1	2
MGP_AJ_P0067012	RRM_5	PF13893.6	2.8e-13	2	2
MGP_AJ_P0067007	RRM_5	PF13893.6	3.1e-13	1	2
MGP_AJ_P0067007	RRM_5	PF13893.6	3.1e-13	2	2
MGP_AJ_P0067010	RRM_5	PF13893.6	3.2e-13	1	2
MGP_AJ_P0067010	RRM_5	PF13893.6	3.2e-13	2	2
MGP_AJ_P0067013	RRM_5	PF13893.6	3.4e-13	1	2
MGP_AJ_P0067013	RRM_5	PF13893.6	3.4e-13	2	2
MGP_AJ_P0067008	RRM_5	PF13893.6	3.6e-13	1	2
MGP_AJ_P0067008	RRM_5	PF13893.6	3.6e-13	2	2
MGP_AJ_P0067011	RRM_5	PF13893.6	3.9e-13	1	2
MGP_AJ_P0067011	RRM_5	PF13893.6	3.9e-13	2	2
MGP_AJ_P0067009	RRM_5	PF13893.6	4e-13	1	2
MGP_AJ_P0067009	RRM_5	PF13893.6	4e-13	2	2
MGP_AJ_P0067012	RRM_1	PF00076.22	2.1e-65	1	3
MGP_AJ_P0067012	RRM_1	PF00076.22	2.1e-65	2	3
MGP_AJ_P0067012	RRM_1	PF00076.22	2.1e-65	3	3
MGP_AJ_P0067010	RRM_1	PF00076.22	2.4e-65	1	3
MGP_AJ_P0067010	RRM_1	PF00076.22	2.4e-65	2	3
MGP_AJ_P0067010	RRM_1	PF00076.22	2.4e-65	3	3
MGP_AJ_P0067007	RRM_1	PF00076.22	2.4e-65	1	3
MGP_AJ_P0067007	RRM_1	PF00076.22	2.4e-65	2	3
MGP_AJ_P0067007	RRM_1	PF00076.22	2.4e-65	3	3
MGP_AJ_P0067013	RRM_1	PF00076.22	2.5e-65	1	3
MGP_AJ_P0067013	RRM_1	PF00076.22	2.5e-65	2	3
MGP_AJ_P0067013	RRM_1	PF00076.22	2.5e-65	3	3
MGP_AJ_P0067008	RRM_1	PF00076.22	2.9e-65	1	3
MGP_AJ_P0067008	RRM_1	PF00076.22	2.9e-65	2	3
MGP_AJ_P0067008	RRM_1	PF00076.22	2.9e-65	3	3
MGP_AJ_P0067011	RRM_1	PF00076.22	2.9e-65	1	3
MGP_AJ_P0067011	RRM_1	PF00076.22	2.9e-65	2	3
MGP_AJ_P0067011	RRM_1	PF00076.22	2.9e-65	3	3
MGP_AJ_P0067009	RRM_1	PF00076.22	3e-65	1	3
MGP_AJ_P0067009	RRM_1	PF00076.22	3e-65	2	3
MGP_AJ_P0067009	RRM_1	PF00076.22	3e-65	3	3
MGP_AJ_P0067015	RRM_1	PF00076.22	1.2e-20	1	1
MGP_AJ_P0067017	RRM_1	PF00076.22	6.8e-13	1	1
MGP_AJ_P0067018	RRM_1	PF00076.22	9.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0067018	-	488	-	MGP_AJ_P0067018	92 (aa)	-	-
MGP_AJ_T0067016	-	464	-	-	- (aa)	-	-
MGP_AJ_T0067017	-	663	-	MGP_AJ_P0067017	94 (aa)	-	-
MGP_AJ_T0067014	-	869	-	-	- (aa)	-	-
MGP_AJ_T0067015	-	644	-	MGP_AJ_P0067015	137 (aa)	-	-
MGP_AJ_T0067012	-	3761	-	MGP_AJ_P0067012	356 (aa)	-	-
MGP_AJ_T0067013	-	4107	-	MGP_AJ_P0067013	371 (aa)	-	-
MGP_AJ_T0067010	-	3775	-	MGP_AJ_P0067010	366 (aa)	-	-
MGP_AJ_T0067011	-	3799	-	MGP_AJ_P0067011	383 (aa)	-	-
MGP_AJ_T0067007	-	3997	XM_006502793	MGP_AJ_P0067007	366 (aa)	XP_006502856	Q61701
MGP_AJ_T0067009	-	4149	-	MGP_AJ_P0067009	385 (aa)	-	-
MGP_AJ_T0067008	-	4024	-	MGP_AJ_P0067008	380 (aa)	-	-

Gene Model

Click here to download MGP_AJ_G0028539's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AJ_G0028539's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0028539	Elavl4	54	33.784	MGP_AJ_G0027586	Rbm8a	62	30.693
MGP_AJ_G0028539	Elavl4	58	31.250	MGP_AJ_G0024638	Rbm4b	95	31.250
MGP_AJ_G0028539	Elavl4	78	40.741	MGP_AJ_G0026098	Celf1	62	40.741
MGP_AJ_G0028539	Elavl4	78	30.088	MGP_AJ_G0018892	Msi2	84	30.208
MGP_AJ_G0028539	Elavl4	67	34.118	MGP_AJ_G0033788	-	52	33.708
MGP_AJ_G0028539	Elavl4	66	42.373	MGP_AJ_G0017470	Dazap1	64	30.275
MGP_AJ_G0028539	Elavl4	74	37.500	MGP_AJ_G0017538	Celf5	89	30.120
MGP_AJ_G0028539	Elavl4	88	38.272	MGP_AJ_G0024174	Celf4	91	35.802
MGP_AJ_G0028539	Elavl4	70	36.458	MGP_AJ_G0035381	Rbms3	83	37.097
MGP_AJ_G0028539	Elavl4	88	36.145	MGP_AJ_G0021757	Pabpc1	58	36.145
MGP_AJ_G0028539	Elavl4	89	33.735	MGP_AJ_G0026800	Pabpc1l	62	33.735
MGP_AJ_G0028539	Elavl4	70	38.889	MGP_AJ_G0017464	Cirbp	84	38.889
MGP_AJ_G0028539	Elavl4	85	40.741	MGP_AJ_G0027512	Celf3	61	40.741
MGP_AJ_G0028539	Elavl4	89	73.585	MGP_AJ_G0033314	Elavl1	98	73.585
MGP_AJ_G0028539	Elavl4	88	32.468	MGP_AJ_G0023107	Pabpc6	60	32.468
MGP_AJ_G0028539	Elavl4	99	79.893	MGP_AJ_G0034452	Elavl3	99	80.323
MGP_AJ_G0028539	Elavl4	81	38.272	MGP_AJ_G0025309	Celf2	61	38.272
MGP_AJ_G0028539	Elavl4	86	30.065	MGP_AJ_G0027150	Pabpc4l	96	30.065
MGP_AJ_G0028539	Elavl4	99	89.315	MGP_AJ_G0028407	Elavl2	100	89.751
MGP_AJ_G0028539	Elavl4	94	35.897	MGP_AJ_G0030941	Tia1	98	32.895
MGP_AJ_G0028539	Elavl4	72	35.821	MGP_AJ_G0030693	Tra2a	59	37.097
MGP_AJ_G0028539	Elavl4	70	36.458	MGP_AJ_G0025740	Rbms1	53	32.773
MGP_AJ_G0028539	Elavl4	54	33.784	MGP_AJ_G0016823	-	61	30.693
MGP_AJ_G0028539	Elavl4	57	37.037	MGP_AJ_G0030062	Snrnp35	59	33.803
MGP_AJ_G0028539	Elavl4	58	31.646	MGP_AJ_G0035518	Rbm3	82	38.710
MGP_AJ_G0028539	Elavl4	88	34.940	MGP_AJ_G0024336	Pabpc2	59	34.940
MGP_AJ_G0028539	Elavl4	74	33.708	MGP_AJ_G0035731	Rbmx	86	33.708
MGP_AJ_G0028539	Elavl4	85	40.741	MGP_AJ_G0034883	Celf6	95	35.802
MGP_AJ_G0028539	Elavl4	88	35.897	MGP_AJ_G0033065	Tial1	73	35.897