EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AJ_G0028827 (Gene tree)
Gene ID: -
Gene Symbol: Trnau1ap
Alias: 1110007F05Rik|AA387999|SECp43|Secp43|Trspap1|WI1-2643G14.2
Full Name: tRNA selenocysteine 1 associated protein 1
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Minus strand
Length: 18491 bases
Position: chr4:128867580-128886070
Accession: 1919037
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0068300	RRM_1	PF00076.22	9.8e-27	1	2
MGP_AJ_P0068300	RRM_1	PF00076.22	9.8e-27	2	2
MGP_AJ_P0068299	RRM_1	PF00076.22	3.3e-17	1	1
MGP_AJ_P0068304	RRM_1	PF00076.22	1.6e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0068310	-	621	-	-	- (aa)	-	-
MGP_AJ_T0068303	-	1017	-	MGP_AJ_P0068303	86 (aa)	-	-
MGP_AJ_T0068302	-	650	-	-	- (aa)	-	-
MGP_AJ_T0068301	-	1791	-	-	- (aa)	-	-
MGP_AJ_T0068300	-	1130	-	MGP_AJ_P0068300	287 (aa)	-	-
MGP_AJ_T0068307	-	663	-	MGP_AJ_P0068307	49 (aa)	-	-
MGP_AJ_T0068306	-	553	-	-	- (aa)	-	-
MGP_AJ_T0068305	-	600	-	MGP_AJ_P0068305	47 (aa)	-	-
MGP_AJ_T0068304	-	474	-	MGP_AJ_P0068304	146 (aa)	-	-
MGP_AJ_T0068309	-	371	-	MGP_AJ_P0068309	70 (aa)	-	-
MGP_AJ_T0068308	-	679	-	-	- (aa)	-	-
MGP_AJ_T0068299	-	961	XM_011250332	MGP_AJ_P0068299	247 (aa)	XP_011248634	Q80VC6

Gene Model

Click here to download MGP_AJ_G0028827's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AJ_G0028827's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0028827	Trnau1ap	60	32.386	MGP_AJ_G0033065	Tial1	73	33.019
MGP_AJ_G0028827	Trnau1ap	88	34.211	MGP_AJ_G0027150	Pabpc4l	89	31.875
MGP_AJ_G0028827	Trnau1ap	98	30.952	MGP_AJ_G0028407	Elavl2	66	30.952
MGP_AJ_G0028827	Trnau1ap	79	30.198	MGP_AJ_G0030941	Tia1	60	31.285