EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AJ_G0029075 (Gene tree)
Gene ID: -
Gene Symbol: Plod1
Alias: 2410042F05Rik|AI854890|AV007929|LH1|Lh1|Plod|lysyl hydroxylase 1
Full Name: procollagen-lysine%2C 2-oxoglutarate 5-dioxygenase 1
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Minus strand
Length: 30134 bases
Position: chr4:145318202-145348335
Accession: 99907
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0069254	2OG-FeII_Oxy	PF03171.20	4.5e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0069256	-	4085	-	-	- (aa)	-	-
MGP_AJ_T0069257	-	512	-	-	- (aa)	-	-
MGP_AJ_T0069254	-	3243	-	MGP_AJ_P0069254	728 (aa)	-	Q9R0E2
MGP_AJ_T0069255	-	805	-	MGP_AJ_P0069255	268 (aa)	-	-
MGP_AJ_T0069258	-	1059	-	MGP_AJ_P0069258	226 (aa)	-	-
MGP_AJ_T0069259	-	358	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_AJ_G0029075's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AJ_G0029075's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0029075	Plod1	97	60.369	MGP_AJ_G0030181	Plod3	95	60.369
MGP_AJ_G0029075	Plod1	99	59.041	MGP_AJ_G0035111	Plod2	95	60.313