EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AJ_G0029808 (Gene tree)
Gene ID: -
Gene Symbol: Gfi1
Alias: AW495828|Gfi-1|Pal-1|Pal1
Full Name: growth factor independent 1
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Minus strand
Length: 9377 bases
Position: chr5:105551734-105561110
Accession: 103170
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0073146	zf-C2H2	PF00096.26	1.5e-27	1	6
MGP_AJ_P0073146	zf-C2H2	PF00096.26	1.5e-27	2	6
MGP_AJ_P0073146	zf-C2H2	PF00096.26	1.5e-27	3	6
MGP_AJ_P0073146	zf-C2H2	PF00096.26	1.5e-27	4	6
MGP_AJ_P0073146	zf-C2H2	PF00096.26	1.5e-27	5	6
MGP_AJ_P0073146	zf-C2H2	PF00096.26	1.5e-27	6	6
MGP_AJ_P0073147	zf-C2H2	PF00096.26	9.4e-25	1	4
MGP_AJ_P0073147	zf-C2H2	PF00096.26	9.4e-25	2	4
MGP_AJ_P0073147	zf-C2H2	PF00096.26	9.4e-25	3	4
MGP_AJ_P0073147	zf-C2H2	PF00096.26	9.4e-25	4	4
MGP_AJ_P0073147	zf-met	PF12874.7	2.2e-08	1	1
MGP_AJ_P0073146	zf-met	PF12874.7	4.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0073149	-	689	-	MGP_AJ_P0073149	186 (aa)	-	-
MGP_AJ_T0073148	-	1439	-	MGP_AJ_P0073148	423 (aa)	-	-
MGP_AJ_T0073147	-	1482	-	MGP_AJ_P0073147	135 (aa)	-	-
MGP_AJ_T0073146	-	2639	XM_006534791	MGP_AJ_P0073146	489 (aa)	XP_006534854	A0A0R4J292

Gene Model

Click here to download MGP_AJ_G0029808's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AJ_G0029808's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0029808	Gfi1	100	46.739	MGP_AJ_G0024569	Zfp236	54	46.739
MGP_AJ_G0029808	Gfi1	99	50.000	MGP_AJ_G0032098	Zfp141	59	45.562
MGP_AJ_G0029808	Gfi1	99	47.287	MGP_AJ_G0030671	Repin1	90	47.287
MGP_AJ_G0029808	Gfi1	100	46.018	MGP_AJ_G0020654	Zfp759	88	46.018
MGP_AJ_G0029808	Gfi1	100	48.031	MGP_AJ_G0031796	Zfp235	62	46.377
MGP_AJ_G0029808	Gfi1	100	46.457	MGP_AJ_G0034123	Zfp1	60	43.478
MGP_AJ_G0029808	Gfi1	100	46.094	MGP_AJ_G0033748	Zfp882	85	46.094
MGP_AJ_G0029808	Gfi1	100	44.030	MGP_AJ_G0034459	Zfp872	80	41.477
MGP_AJ_G0029808	Gfi1	100	49.254	MGP_AJ_G0021971	Zfp251	74	47.024
MGP_AJ_G0029808	Gfi1	100	45.312	MGP_AJ_G0023194	Zfp677	82	43.452
MGP_AJ_G0029808	Gfi1	100	46.269	MGP_AJ_G0023196	Zfp51	75	44.828
MGP_AJ_G0029808	Gfi1	100	43.590	MGP_AJ_G0031148	Zfp637	71	43.590
MGP_AJ_G0029808	Gfi1	100	43.860	MGP_AJ_G0020619	Gm5141	88	42.105
MGP_AJ_G0029808	Gfi1	100	47.788	MGP_AJ_G0020653	Rslcan18	71	47.788
MGP_AJ_G0029808	Gfi1	100	49.606	MGP_AJ_G0031797	Zfp114	58	48.447
MGP_AJ_G0029808	Gfi1	100	47.368	MGP_AJ_G0026897	Zfp64	70	38.298
MGP_AJ_G0029808	Gfi1	100	45.238	MGP_AJ_G0018368	Zfp867	79	43.023
MGP_AJ_G0029808	Gfi1	100	48.031	MGP_AJ_G0020671	Zfp748	92	48.447
MGP_AJ_G0029808	Gfi1	100	45.794	MGP_AJ_G0018223	Zfp454	68	42.262
MGP_AJ_G0029808	Gfi1	100	47.863	MGP_AJ_G0031800	Zfp93	90	45.000
MGP_AJ_G0029808	Gfi1	100	46.457	MGP_AJ_G0031802	Zfp94	65	44.970
MGP_AJ_G0029808	Gfi1	100	45.522	MGP_AJ_G0033747	Zfp709	87	43.976
MGP_AJ_G0029808	Gfi1	100	48.507	MGP_AJ_G0031967	Zfp420	97	49.194
MGP_AJ_G0029808	Gfi1	99	44.444	MGP_AJ_G0031553	Zfp784	71	44.444
MGP_AJ_G0029808	Gfi1	99	47.368	MGP_AJ_G0031550	Zfp865	66	46.753
MGP_AJ_G0029808	Gfi1	100	42.857	MGP_AJ_G0023218	Zscan10	77	42.771
MGP_AJ_G0029808	Gfi1	100	39.535	MGP_AJ_G0033966	Zfp319	93	40.116
MGP_AJ_G0029808	Gfi1	100	48.031	MGP_AJ_G0031904	Zfp974	89	48.031
MGP_AJ_G0029808	Gfi1	99	45.714	MGP_AJ_G0031832	Zfp574	62	43.925
MGP_AJ_G0029808	Gfi1	100	49.219	MGP_AJ_G0029473	Zbtb49	62	51.786
MGP_AJ_G0029808	Gfi1	99	48.507	MGP_AJ_G0026427	Zfp661	58	48.175
MGP_AJ_G0029808	Gfi1	99	45.038	MGP_AJ_G0033019	E430018J23Rik	57	45.038
MGP_AJ_G0029808	Gfi1	100	54.321	MGP_AJ_G0033015	Zfp768	51	45.833
MGP_AJ_G0029808	Gfi1	100	47.863	MGP_AJ_G0026859	Zfp334	62	47.333
MGP_AJ_G0029808	Gfi1	100	48.276	MGP_AJ_G0018319	Zfp672	90	48.276
MGP_AJ_G0029808	Gfi1	100	44.882	MGP_AJ_G0032102	Zfp715	63	43.210
MGP_AJ_G0029808	Gfi1	99	45.133	MGP_AJ_G0030801	Prdm5	74	41.463