EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AJ_G0029933 (Gene tree)
Gene ID: -
Gene Symbol: Msi1
Alias: Msi1|Msi1h|Musahi1|m-Msi-1
Full Name: musashi RNA-binding protein 1
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Plus strand
Length: 25994 bases
Position: chr5:113598079-113624072
Accession: 107376
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0073750	RRM_1	PF00076.22	6.9e-33	1	2
MGP_AJ_P0073750	RRM_1	PF00076.22	6.9e-33	2	2
MGP_AJ_P0073751	RRM_1	PF00076.22	1.6e-28	1	2
MGP_AJ_P0073751	RRM_1	PF00076.22	1.6e-28	2	2
MGP_AJ_P0073755	RRM_1	PF00076.22	1.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0073749	-	2630	-	-	- (aa)	-	-
MGP_AJ_T0073754	-	581	-	-	- (aa)	-	-
MGP_AJ_T0073755	-	726	-	MGP_AJ_P0073755	196 (aa)	-	-
MGP_AJ_T0073756	-	599	-	-	- (aa)	-	-
MGP_AJ_T0073750	-	2986	-	MGP_AJ_P0073750	362 (aa)	-	-
MGP_AJ_T0073751	-	807	-	MGP_AJ_P0073751	268 (aa)	-	-
MGP_AJ_T0073752	-	367	-	-	- (aa)	-	-
MGP_AJ_T0073753	-	806	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_AJ_G0029933's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AJ_G0029933's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0029933	Msi1	99	75.665	MGP_AJ_G0018892	Msi2	100	90.323
MGP_AJ_G0029933	Msi1	57	42.949	MGP_AJ_G0020581	Hnrnpa0	59	43.646
MGP_AJ_G0029933	Msi1	61	51.064	MGP_AJ_G0026919	Rbm38	66	46.809
MGP_AJ_G0029933	Msi1	58	48.052	MGP_AJ_G0029748	Hnrnpdl	75	39.676
MGP_AJ_G0029933	Msi1	59	49.485	MGP_AJ_G0029746	Hnrnpd	100	68.000
MGP_AJ_G0029933	Msi1	61	43.750	MGP_AJ_G0030704	Hnrnpa2b1	91	41.379
MGP_AJ_G0029933	Msi1	58	48.052	MGP_AJ_G0018238	Hnrnpab	79	40.800
MGP_AJ_G0029933	Msi1	59	40.299	MGP_AJ_G0025834	-	60	40.385
MGP_AJ_G0029933	Msi1	62	34.021	MGP_AJ_G0029094	Tardbp	79	34.021
MGP_AJ_G0029933	Msi1	51	38.983	MGP_AJ_G0017464	Cirbp	87	40.351
MGP_AJ_G0029933	Msi1	56	41.379	MGP_AJ_G0033065	Tial1	69	31.469
MGP_AJ_G0029933	Msi1	88	42.308	MGP_AJ_G0017470	Dazap1	98	44.311