EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AJ_G0030329 (Gene tree)
Gene ID: -
Gene Symbol: Cpsf4
Alias: 30kDa|C79664|Cpsf30
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Plus strand
Length: 15347 bases
Position: chr5:144124760-144140106
Accession: 1861602
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0075907	zf-CCCH	PF00642.24	1.1e-20	1	2
MGP_AJ_P0075907	zf-CCCH	PF00642.24	1.1e-20	2	2
MGP_AJ_P0075902	zf-CCCH	PF00642.24	3e-20	1	2
MGP_AJ_P0075902	zf-CCCH	PF00642.24	3e-20	2	2
MGP_AJ_P0075905	zf-CCCH	PF00642.24	3.1e-20	1	2
MGP_AJ_P0075905	zf-CCCH	PF00642.24	3.1e-20	2	2
MGP_AJ_P0075904	zf-CCCH	PF00642.24	5.9e-20	1	2
MGP_AJ_P0075904	zf-CCCH	PF00642.24	5.9e-20	2	2
MGP_AJ_P0075903	zf-CCCH	PF00642.24	2.4e-15	1	2
MGP_AJ_P0075903	zf-CCCH	PF00642.24	2.4e-15	2	2
MGP_AJ_P0075903	zf-CCHC	PF00098.23	5.6e-06	1	1
MGP_AJ_P0075902	zf-CCHC	PF00098.23	6.7e-06	1	1
MGP_AJ_P0075905	zf-CCHC	PF00098.23	6.7e-06	1	1
MGP_AJ_P0075904	zf-CCHC	PF00098.23	7.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0075908	-	2985	-	-	- (aa)	-	-
MGP_AJ_T0075903	-	1624	-	MGP_AJ_P0075903	211 (aa)	-	-
MGP_AJ_T0075902	-	1731	XM_006504845	MGP_AJ_P0075902	243 (aa)	XP_006504908	Q8BQZ5
MGP_AJ_T0075907	-	850	-	MGP_AJ_P0075907	207 (aa)	-	-
MGP_AJ_T0075906	-	1219	-	MGP_AJ_P0075906	62 (aa)	-	-
MGP_AJ_T0075905	-	1405	-	MGP_AJ_P0075905	244 (aa)	-	-
MGP_AJ_T0075904	-	1774	-	MGP_AJ_P0075904	269 (aa)	-	-

Gene Model

Click here to download MGP_AJ_G0030329's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AJ_G0030329's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0030329	Cpsf4	86	52.358	MGP_AJ_G0019322	Cpsf4l	82	62.400