EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AJ_G0030570 (Gene tree)
Gene ID: -
Gene Symbol: Mkrn1
Alias: RFP
Full Name: makorin%2C ring finger protein%2C 1
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Minus strand
Length: 22888 bases
Position: chr6:36125916-36148803
Accession: 1859353
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0077138	zf-CCCH	PF00642.24	1.4e-17	1	3
MGP_AJ_P0077138	zf-CCCH	PF00642.24	1.4e-17	2	3
MGP_AJ_P0077138	zf-CCCH	PF00642.24	1.4e-17	3	3
MGP_AJ_P0077141	zf-CCCH	PF00642.24	1.9e-16	1	3
MGP_AJ_P0077141	zf-CCCH	PF00642.24	1.9e-16	2	3
MGP_AJ_P0077141	zf-CCCH	PF00642.24	1.9e-16	3	3
MGP_AJ_P0077140	zf-CCCH	PF00642.24	1.5e-12	1	2
MGP_AJ_P0077140	zf-CCCH	PF00642.24	1.5e-12	2	2
MGP_AJ_P0077143	zf-CCCH	PF00642.24	1.3e-10	1	2
MGP_AJ_P0077143	zf-CCCH	PF00642.24	1.3e-10	2	2
MGP_AJ_P0077144	zf-CCCH	PF00642.24	3.3e-09	1	2
MGP_AJ_P0077144	zf-CCCH	PF00642.24	3.3e-09	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0077138	-	2866	XM_006506396	MGP_AJ_P0077138	481 (aa)	XP_006506459	Q9QXP6
MGP_AJ_T0077139	-	773	-	MGP_AJ_P0077139	206 (aa)	-	-
MGP_AJ_T0077144	-	751	-	MGP_AJ_P0077144	196 (aa)	-	-
MGP_AJ_T0077141	-	1511	-	MGP_AJ_P0077141	329 (aa)	-	-
MGP_AJ_T0077140	-	1485	-	MGP_AJ_P0077140	343 (aa)	-	-
MGP_AJ_T0077143	-	542	-	MGP_AJ_P0077143	180 (aa)	-	-
MGP_AJ_T0077142	-	584	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_AJ_G0030570's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AJ_G0030570's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0030570	Mkrn1	99	40.951	MGP_AJ_G0032307	Mkrn3	83	47.619
MGP_AJ_G0030570	Mkrn1	83	45.548	MGP_AJ_G0031120	Mkrn2	95	45.679