EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AJ_G0030748 (Gene tree)
Gene ID: -
Gene Symbol: Lsm5
Alias: 2010208O10Rik|2310034K10Rik
Full Name: LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Minus strand
Length: 3416 bases
Position: chr6:53553635-53557050
Accession: 1913623
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0077795	LSM	PF01423.22	4.4e-20	1	1
MGP_AJ_P0077796	LSM	PF01423.22	5.5e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0077795	-	477	-	MGP_AJ_P0077795	91 (aa)	-	P62322
MGP_AJ_T0077796	-	416	-	MGP_AJ_P0077796	59 (aa)	-	-
MGP_AJ_T0077797	-	757	-	-	- (aa)	-	-
MGP_AJ_T0077798	-	366	-	MGP_AJ_P0077798	42 (aa)	-	-

Gene Model

Click here to download MGP_AJ_G0030748's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AJ_G0030748's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0030748	Lsm5	76	32.877	MGP_AJ_G0016471	Snrpe	77	32.877
MGP_AJ_G0030748	Lsm5	82	34.667	MGP_AJ_G0031018	Lsm3	74	34.667