EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AJ_G0030801 (Gene tree)
Gene ID: -
Gene Symbol: Prdm5
Alias: 4432417F03Rik|6530401I24Rik|AI197291|E130112L17Rik|PFM2
Full Name: PR domain containing 5
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Plus strand
Length: 161960 bases
Position: chr6:62851086-63013045
Accession: 1918029
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0077963	zf-C2H2	PF00096.26	5.7e-59	1	9
MGP_AJ_P0077963	zf-C2H2	PF00096.26	5.7e-59	2	9
MGP_AJ_P0077963	zf-C2H2	PF00096.26	5.7e-59	3	9
MGP_AJ_P0077963	zf-C2H2	PF00096.26	5.7e-59	4	9
MGP_AJ_P0077963	zf-C2H2	PF00096.26	5.7e-59	5	9
MGP_AJ_P0077963	zf-C2H2	PF00096.26	5.7e-59	6	9
MGP_AJ_P0077963	zf-C2H2	PF00096.26	5.7e-59	7	9
MGP_AJ_P0077963	zf-C2H2	PF00096.26	5.7e-59	8	9
MGP_AJ_P0077963	zf-C2H2	PF00096.26	5.7e-59	9	9
MGP_AJ_P0077958	zf-C2H2	PF00096.26	1e-58	1	9
MGP_AJ_P0077958	zf-C2H2	PF00096.26	1e-58	2	9
MGP_AJ_P0077958	zf-C2H2	PF00096.26	1e-58	3	9
MGP_AJ_P0077958	zf-C2H2	PF00096.26	1e-58	4	9
MGP_AJ_P0077958	zf-C2H2	PF00096.26	1e-58	5	9
MGP_AJ_P0077958	zf-C2H2	PF00096.26	1e-58	6	9
MGP_AJ_P0077958	zf-C2H2	PF00096.26	1e-58	7	9
MGP_AJ_P0077958	zf-C2H2	PF00096.26	1e-58	8	9
MGP_AJ_P0077958	zf-C2H2	PF00096.26	1e-58	9	9
MGP_AJ_P0077961	zf-C2H2	PF00096.26	1e-48	1	9
MGP_AJ_P0077961	zf-C2H2	PF00096.26	1e-48	2	9
MGP_AJ_P0077961	zf-C2H2	PF00096.26	1e-48	3	9
MGP_AJ_P0077961	zf-C2H2	PF00096.26	1e-48	4	9
MGP_AJ_P0077961	zf-C2H2	PF00096.26	1e-48	5	9
MGP_AJ_P0077961	zf-C2H2	PF00096.26	1e-48	6	9
MGP_AJ_P0077961	zf-C2H2	PF00096.26	1e-48	7	9
MGP_AJ_P0077961	zf-C2H2	PF00096.26	1e-48	8	9
MGP_AJ_P0077961	zf-C2H2	PF00096.26	1e-48	9	9
MGP_AJ_P0077960	zf-C2H2	PF00096.26	8.2e-27	1	5
MGP_AJ_P0077960	zf-C2H2	PF00096.26	8.2e-27	2	5
MGP_AJ_P0077960	zf-C2H2	PF00096.26	8.2e-27	3	5
MGP_AJ_P0077960	zf-C2H2	PF00096.26	8.2e-27	4	5
MGP_AJ_P0077960	zf-C2H2	PF00096.26	8.2e-27	5	5
MGP_AJ_P0077963	zf-met	PF12874.7	1.5e-20	1	3
MGP_AJ_P0077963	zf-met	PF12874.7	1.5e-20	2	3
MGP_AJ_P0077963	zf-met	PF12874.7	1.5e-20	3	3
MGP_AJ_P0077958	zf-met	PF12874.7	2.7e-20	1	3
MGP_AJ_P0077958	zf-met	PF12874.7	2.7e-20	2	3
MGP_AJ_P0077958	zf-met	PF12874.7	2.7e-20	3	3
MGP_AJ_P0077961	zf-met	PF12874.7	8.9e-17	1	3
MGP_AJ_P0077961	zf-met	PF12874.7	8.9e-17	2	3
MGP_AJ_P0077961	zf-met	PF12874.7	8.9e-17	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0077960	-	984	-	MGP_AJ_P0077960	221 (aa)	-	-
MGP_AJ_T0077963	-	1740	-	MGP_AJ_P0077963	579 (aa)	-	-
MGP_AJ_T0077962	-	4168	-	-	- (aa)	-	-
MGP_AJ_T0077958	-	2155	XM_006506600	MGP_AJ_P0077958	599 (aa)	XP_006506663	Q9CXE0
MGP_AJ_T0077959	-	1922	-	-	- (aa)	-	-
MGP_AJ_T0077961	-	1488	-	MGP_AJ_P0077961	415 (aa)	-	-
MGP_AJ_T0077964	-	1920	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_AJ_G0030801's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AJ_G0030801's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0030801	Prdm5	82	40.076	MGP_AJ_G0034459	Zfp872	99	40.530
MGP_AJ_G0030801	Prdm5	91	48.387	MGP_AJ_G0031967	Zfp420	95	41.722
MGP_AJ_G0030801	Prdm5	72	48.760	MGP_AJ_G0032102	Zfp715	66	39.333
MGP_AJ_G0030801	Prdm5	90	42.609	MGP_AJ_G0033748	Zfp882	94	35.714
MGP_AJ_G0030801	Prdm5	74	50.781	MGP_AJ_G0020619	Gm5141	85	50.781
MGP_AJ_G0030801	Prdm5	78	34.752	MGP_AJ_G0033966	Zfp319	88	34.602
MGP_AJ_G0030801	Prdm5	77	40.588	MGP_AJ_G0032098	Zfp141	61	40.588
MGP_AJ_G0030801	Prdm5	90	35.235	MGP_AJ_G0023218	Zscan10	88	32.440
MGP_AJ_G0030801	Prdm5	86	45.000	MGP_AJ_G0031797	Zfp114	54	39.273
MGP_AJ_G0030801	Prdm5	90	46.067	MGP_AJ_G0026859	Zfp334	67	40.000
MGP_AJ_G0030801	Prdm5	61	45.045	MGP_AJ_G0026188	Wt1	55	40.876
MGP_AJ_G0030801	Prdm5	75	34.545	MGP_AJ_G0026897	Zfp64	69	31.561
MGP_AJ_G0030801	Prdm5	68	42.361	MGP_AJ_G0030671	Repin1	91	33.016
MGP_AJ_G0030801	Prdm5	78	36.774	MGP_AJ_G0031904	Zfp974	89	37.354
MGP_AJ_G0030801	Prdm5	91	39.062	MGP_AJ_G0021971	Zfp251	66	43.005
MGP_AJ_G0030801	Prdm5	88	42.857	MGP_AJ_G0018319	Zfp672	86	44.286
MGP_AJ_G0030801	Prdm5	67	46.667	MGP_AJ_G0031832	Zfp574	85	30.051
MGP_AJ_G0030801	Prdm5	74	37.838	MGP_AJ_G0033019	E430018J23Rik	71	37.838
MGP_AJ_G0030801	Prdm5	87	46.739	MGP_AJ_G0024569	Zfp236	77	43.860
MGP_AJ_G0030801	Prdm5	99	38.194	MGP_AJ_G0017583	Prdm4	59	38.158
MGP_AJ_G0030801	Prdm5	76	39.726	MGP_AJ_G0033747	Zfp709	87	39.726
MGP_AJ_G0030801	Prdm5	84	36.243	MGP_AJ_G0020671	Zfp748	92	39.735
MGP_AJ_G0030801	Prdm5	74	40.104	MGP_AJ_G0031542	Zfp628	60	38.208
MGP_AJ_G0030801	Prdm5	70	48.315	MGP_AJ_G0023214	Zfp945	82	35.252
MGP_AJ_G0030801	Prdm5	78	38.571	MGP_AJ_G0018223	Zfp454	68	38.571
MGP_AJ_G0030801	Prdm5	84	36.545	MGP_AJ_G0018368	Zfp867	94	36.545
MGP_AJ_G0030801	Prdm5	68	48.544	MGP_AJ_G0034206	Snai3	55	42.336
MGP_AJ_G0030801	Prdm5	73	40.562	MGP_AJ_G0033015	Zfp768	53	43.571
MGP_AJ_G0030801	Prdm5	81	42.941	MGP_AJ_G0026427	Zfp661	65	42.941
MGP_AJ_G0030801	Prdm5	95	43.220	MGP_AJ_G0023194	Zfp677	79	36.027
MGP_AJ_G0030801	Prdm5	74	41.463	MGP_AJ_G0029808	Gfi1	99	45.133
MGP_AJ_G0030801	Prdm5	84	32.735	MGP_AJ_G0031550	Zfp865	78	32.895
MGP_AJ_G0030801	Prdm5	77	44.643	MGP_AJ_G0031148	Zfp637	83	46.479
MGP_AJ_G0030801	Prdm5	79	40.244	MGP_AJ_G0029473	Zbtb49	96	45.070
MGP_AJ_G0030801	Prdm5	67	50.847	MGP_AJ_G0034123	Zfp1	67	40.167
MGP_AJ_G0030801	Prdm5	73	44.286	MGP_AJ_G0031796	Zfp235	69	39.608
MGP_AJ_G0030801	Prdm5	69	47.857	MGP_AJ_G0031795	Zfp112	68	39.711
MGP_AJ_G0030801	Prdm5	74	48.913	MGP_AJ_G0031802	Zfp94	77	38.489
MGP_AJ_G0030801	Prdm5	93	37.500	MGP_AJ_G0031800	Zfp93	89	37.500
MGP_AJ_G0030801	Prdm5	68	47.826	MGP_AJ_G0031801	Zfp61	53	41.525
MGP_AJ_G0030801	Prdm5	84	43.277	MGP_AJ_G0020653	Rslcan18	71	39.200
MGP_AJ_G0030801	Prdm5	83	38.014	MGP_AJ_G0020654	Zfp759	94	38.870
MGP_AJ_G0030801	Prdm5	78	47.826	MGP_AJ_G0020235	Zkscan4	53	47.826
MGP_AJ_G0030801	Prdm5	96	39.683	MGP_AJ_G0023196	Zfp51	98	39.683