EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AJ_G0031018 (Gene tree)
Gene ID: -
Gene Symbol: Lsm3
Alias: 1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2
Full Name: LSM3 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Plus strand
Length: 6726 bases
Position: chr6:89568743-89575468
Accession: 1914928
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0079000	LSM	PF01423.22	8.4e-20	1	1
MGP_AJ_P0079004	LSM	PF01423.22	8.4e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0079004	-	618	-	MGP_AJ_P0079004	102 (aa)	-	-
MGP_AJ_T0079002	-	2030	-	-	- (aa)	-	-
MGP_AJ_T0079003	-	504	-	-	- (aa)	-	-
MGP_AJ_T0079000	-	743	-	MGP_AJ_P0079000	102 (aa)	-	P62311
MGP_AJ_T0079001	-	520	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_AJ_G0031018's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AJ_G0031018's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0031018	Lsm3	77	31.707	MGP_AJ_G0031738	Snrpd2	69	31.707
MGP_AJ_G0031018	Lsm3	74	34.667	MGP_AJ_G0030748	Lsm5	82	34.667