EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AJ_G0031967 (Gene tree)
Gene ID: -
Gene Symbol: Zfp420
Alias: B230119D13|B230312I18Rik|mszf59-1|mszf70
Full Name: zinc finger protein 420
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Plus strand
Length: 15231 bases
Position: chr7:28061694-28076924
Accession: 2444666
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0082878	zf-C2H2	PF00096.26	2.6e-113	1	18
MGP_AJ_P0082878	zf-C2H2	PF00096.26	2.6e-113	2	18
MGP_AJ_P0082878	zf-C2H2	PF00096.26	2.6e-113	3	18
MGP_AJ_P0082878	zf-C2H2	PF00096.26	2.6e-113	4	18
MGP_AJ_P0082878	zf-C2H2	PF00096.26	2.6e-113	5	18
MGP_AJ_P0082878	zf-C2H2	PF00096.26	2.6e-113	6	18
MGP_AJ_P0082878	zf-C2H2	PF00096.26	2.6e-113	7	18
MGP_AJ_P0082878	zf-C2H2	PF00096.26	2.6e-113	8	18
MGP_AJ_P0082878	zf-C2H2	PF00096.26	2.6e-113	9	18
MGP_AJ_P0082878	zf-C2H2	PF00096.26	2.6e-113	10	18
MGP_AJ_P0082878	zf-C2H2	PF00096.26	2.6e-113	11	18
MGP_AJ_P0082878	zf-C2H2	PF00096.26	2.6e-113	12	18
MGP_AJ_P0082878	zf-C2H2	PF00096.26	2.6e-113	13	18
MGP_AJ_P0082878	zf-C2H2	PF00096.26	2.6e-113	14	18
MGP_AJ_P0082878	zf-C2H2	PF00096.26	2.6e-113	15	18
MGP_AJ_P0082878	zf-C2H2	PF00096.26	2.6e-113	16	18
MGP_AJ_P0082878	zf-C2H2	PF00096.26	2.6e-113	17	18
MGP_AJ_P0082878	zf-C2H2	PF00096.26	2.6e-113	18	18
MGP_AJ_P0082881	zf-C2H2	PF00096.26	2.6e-113	1	18
MGP_AJ_P0082881	zf-C2H2	PF00096.26	2.6e-113	2	18
MGP_AJ_P0082881	zf-C2H2	PF00096.26	2.6e-113	3	18
MGP_AJ_P0082881	zf-C2H2	PF00096.26	2.6e-113	4	18
MGP_AJ_P0082881	zf-C2H2	PF00096.26	2.6e-113	5	18
MGP_AJ_P0082881	zf-C2H2	PF00096.26	2.6e-113	6	18
MGP_AJ_P0082881	zf-C2H2	PF00096.26	2.6e-113	7	18
MGP_AJ_P0082881	zf-C2H2	PF00096.26	2.6e-113	8	18
MGP_AJ_P0082881	zf-C2H2	PF00096.26	2.6e-113	9	18
MGP_AJ_P0082881	zf-C2H2	PF00096.26	2.6e-113	10	18
MGP_AJ_P0082881	zf-C2H2	PF00096.26	2.6e-113	11	18
MGP_AJ_P0082881	zf-C2H2	PF00096.26	2.6e-113	12	18
MGP_AJ_P0082881	zf-C2H2	PF00096.26	2.6e-113	13	18
MGP_AJ_P0082881	zf-C2H2	PF00096.26	2.6e-113	14	18
MGP_AJ_P0082881	zf-C2H2	PF00096.26	2.6e-113	15	18
MGP_AJ_P0082881	zf-C2H2	PF00096.26	2.6e-113	16	18
MGP_AJ_P0082881	zf-C2H2	PF00096.26	2.6e-113	17	18
MGP_AJ_P0082881	zf-C2H2	PF00096.26	2.6e-113	18	18
MGP_AJ_P0082878	zf-met	PF12874.7	8.3e-08	1	1
MGP_AJ_P0082881	zf-met	PF12874.7	8.3e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0082880	-	2976	-	-	- (aa)	-	-
MGP_AJ_T0082879	-	689	-	-	- (aa)	-	-
MGP_AJ_T0082878	-	2537	XM_006539873	MGP_AJ_P0082878	578 (aa)	XP_006539936	Q7TMN8
MGP_AJ_T0082882	-	764	-	-	- (aa)	-	-
MGP_AJ_T0082881	-	2744	-	MGP_AJ_P0082881	578 (aa)	-	-

Gene Model

Click here to download MGP_AJ_G0031967's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AJ_G0031967's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0031967	Zfp420	98	52.151	MGP_AJ_G0018368	Zfp867	82	52.151
MGP_AJ_G0031967	Zfp420	98	49.524	MGP_AJ_G0018319	Zfp672	89	49.524
MGP_AJ_G0031967	Zfp420	99	54.118	MGP_AJ_G0020619	Gm5141	87	54.046
MGP_AJ_G0031967	Zfp420	99	36.677	MGP_AJ_G0031832	Zfp574	93	37.533
MGP_AJ_G0031967	Zfp420	97	44.706	MGP_AJ_G0029008	Zbtb17	69	44.706
MGP_AJ_G0031967	Zfp420	95	41.722	MGP_AJ_G0030801	Prdm5	91	48.387
MGP_AJ_G0031967	Zfp420	98	50.000	MGP_AJ_G0033748	Zfp882	85	50.000
MGP_AJ_G0031967	Zfp420	98	56.275	MGP_AJ_G0020653	Rslcan18	71	56.275
MGP_AJ_G0031967	Zfp420	98	59.532	MGP_AJ_G0018223	Zfp454	71	57.803
MGP_AJ_G0031967	Zfp420	97	56.897	MGP_AJ_G0031148	Zfp637	75	54.167
MGP_AJ_G0031967	Zfp420	98	54.648	MGP_AJ_G0023194	Zfp677	89	54.648
MGP_AJ_G0031967	Zfp420	98	55.210	MGP_AJ_G0023196	Zfp51	88	55.210
MGP_AJ_G0031967	Zfp420	97	49.194	MGP_AJ_G0029808	Gfi1	100	48.507
MGP_AJ_G0031967	Zfp420	98	48.998	MGP_AJ_G0031904	Zfp974	91	49.518
MGP_AJ_G0031967	Zfp420	99	54.233	MGP_AJ_G0034459	Zfp872	86	53.608
MGP_AJ_G0031967	Zfp420	99	56.553	MGP_AJ_G0031796	Zfp235	73	56.553
MGP_AJ_G0031967	Zfp420	98	53.378	MGP_AJ_G0031797	Zfp114	75	53.378
MGP_AJ_G0031967	Zfp420	98	56.182	MGP_AJ_G0020671	Zfp748	93	56.182
MGP_AJ_G0031967	Zfp420	99	50.270	MGP_AJ_G0023214	Zfp945	98	51.032
MGP_AJ_G0031967	Zfp420	99	37.634	MGP_AJ_G0031550	Zfp865	80	37.634
MGP_AJ_G0031967	Zfp420	95	30.691	MGP_AJ_G0031551	-	66	31.343
MGP_AJ_G0031967	Zfp420	99	51.052	MGP_AJ_G0032102	Zfp715	71	51.316
MGP_AJ_G0031967	Zfp420	99	57.692	MGP_AJ_G0034123	Zfp1	78	57.692
MGP_AJ_G0031967	Zfp420	95	59.426	MGP_AJ_G0026427	Zfp661	72	59.426
MGP_AJ_G0031967	Zfp420	98	48.744	MGP_AJ_G0029473	Zbtb49	89	50.000
MGP_AJ_G0031967	Zfp420	99	55.556	MGP_AJ_G0031800	Zfp93	100	55.556
MGP_AJ_G0031967	Zfp420	99	57.095	MGP_AJ_G0031802	Zfp94	82	57.095
MGP_AJ_G0031967	Zfp420	98	61.977	MGP_AJ_G0032098	Zfp141	64	61.977
MGP_AJ_G0031967	Zfp420	99	47.059	MGP_AJ_G0024569	Zfp236	79	47.059
MGP_AJ_G0031967	Zfp420	97	41.080	MGP_AJ_G0023218	Zscan10	78	40.179
MGP_AJ_G0031967	Zfp420	98	38.136	MGP_AJ_G0031542	Zfp628	60	38.748
MGP_AJ_G0031967	Zfp420	99	56.356	MGP_AJ_G0031801	Zfp61	59	56.356
MGP_AJ_G0031967	Zfp420	99	60.656	MGP_AJ_G0021971	Zfp251	78	60.656
MGP_AJ_G0031967	Zfp420	99	56.115	MGP_AJ_G0033015	Zfp768	51	56.071
MGP_AJ_G0031967	Zfp420	98	39.286	MGP_AJ_G0026897	Zfp64	69	36.504
MGP_AJ_G0031967	Zfp420	99	51.196	MGP_AJ_G0020654	Zfp759	88	50.364
MGP_AJ_G0031967	Zfp420	98	53.398	MGP_AJ_G0031795	Zfp112	67	53.398
MGP_AJ_G0031967	Zfp420	100	54.127	MGP_AJ_G0033747	Zfp709	90	54.310
MGP_AJ_G0031967	Zfp420	99	52.489	MGP_AJ_G0026859	Zfp334	75	52.489
MGP_AJ_G0031967	Zfp420	98	47.967	MGP_AJ_G0033019	E430018J23Rik	67	47.967
MGP_AJ_G0031967	Zfp420	99	50.909	MGP_AJ_G0020235	Zkscan4	54	61.184
MGP_AJ_G0031967	Zfp420	98	37.309	MGP_AJ_G0033966	Zfp319	93	36.919
MGP_AJ_G0031967	Zfp420	98	46.094	MGP_AJ_G0030671	Repin1	92	46.094