EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AJ_G0033822 (Gene tree)
Gene ID: -
Gene Symbol: Ddx39
Alias: 2610307C23Rik|BAT1|DDXL|Ddx39a|URH49
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Plus strand
Length: 11714 bases
Position: chr8:81253965-81265678
Accession: 1915528
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0089680	ResIII	PF04851.15	3.1e-05	1	1
MGP_AJ_P0089683	ResIII	PF04851.15	3.1e-05	1	1
MGP_AJ_P0089684	ResIII	PF04851.15	3.1e-05	1	1
MGP_AJ_P0089680	DEAD	PF00270.29	4.1e-38	1	1
MGP_AJ_P0089683	DEAD	PF00270.29	4.1e-38	1	1
MGP_AJ_P0089684	DEAD	PF00270.29	4.1e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0089685	-	754	-	-	- (aa)	-	-
MGP_AJ_T0089684	-	1793	-	MGP_AJ_P0089684	427 (aa)	-	-
MGP_AJ_T0089683	-	3858	-	MGP_AJ_P0089683	427 (aa)	-	-
MGP_AJ_T0089682	-	1551	-	MGP_AJ_P0089682	208 (aa)	-	-
MGP_AJ_T0089681	-	1927	-	-	- (aa)	-	-
MGP_AJ_T0089680	-	1656	XM_006531332	MGP_AJ_P0089680	427 (aa)	XP_006531395	Q8VDW0

Gene Model

Click here to download MGP_AJ_G0033822's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AJ_G0033822's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0033822	Ddx39	76	42.138	MGP_AJ_G0022640	Eif4a2	90	37.386
MGP_AJ_G0033822	Ddx39	90	32.061	MGP_AJ_G0034112	Ddx19b	81	32.061
MGP_AJ_G0033822	Ddx39	77	32.934	MGP_AJ_G0034111	Ddx19a	76	30.483
MGP_AJ_G0033822	Ddx39	78	91.053	MGP_AJ_G0023592	Ddx39b	100	91.053
MGP_AJ_G0033822	Ddx39	90	30.392	MGP_AJ_G0016900	D1Pas1	57	31.565
MGP_AJ_G0033822	Ddx39	90	34.074	MGP_AJ_G0027678	Ddx20	50	34.140
MGP_AJ_G0033822	Ddx39	89	32.620	MGP_AJ_G0031388	Ddx47	90	32.095
MGP_AJ_G0033822	Ddx39	86	37.197	MGP_AJ_G0019446	Eif4a3	89	37.197
MGP_AJ_G0033822	Ddx39	90	30.392	MGP_AJ_G0035549	Ddx3x	56	31.565
MGP_AJ_G0033822	Ddx39	81	30.312	MGP_AJ_G0016395	Ddx18	51	30.769
MGP_AJ_G0033822	Ddx39	75	35.897	MGP_AJ_G0030861	-	76	35.897
MGP_AJ_G0033822	Ddx39	74	34.969	MGP_AJ_G0017991	Ddx56	61	32.051
MGP_AJ_G0033822	Ddx39	87	33.156	MGP_AJ_G0033682	Ddx49	97	33.333
MGP_AJ_G0033822	Ddx39	85	31.183	MGP_AJ_G0034514	Ddx25	81	31.328