EuRBPDB

Description

Ensembl ID: MGP_AJ_G0035090 (Gene tree)
Gene ID: -
Gene Symbol: Syncrip
Alias: 2610109K23Rik|4632417O19Rik|GRY-RBP|Hnrpq|Nsap1|Nsap1l|RRM RNA binding protein GRY-RBP|hnRNP Q|pp68
Full Name: synaptotagmin binding%2C cytoplasmic RNA interacting protein
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Minus strand
Length: 36888 bases
Position: chr9:86206678-86243565
Accession: 1891690
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0093625	RRM_5	PF13893.6	2.5e-06	1	1
MGP_AJ_P0093629	RRM_5	PF13893.6	3.2e-06	1	1
MGP_AJ_P0093626	RRM_5	PF13893.6	4.8e-06	1	1
MGP_AJ_P0093623	RRM_5	PF13893.6	4.8e-06	1	1
MGP_AJ_P0093628	RRM_5	PF13893.6	6.2e-06	1	1
MGP_AJ_P0093626	RRM_1	PF00076.22	3e-44	1	3
MGP_AJ_P0093626	RRM_1	PF00076.22	3e-44	2	3
MGP_AJ_P0093626	RRM_1	PF00076.22	3e-44	3	3
MGP_AJ_P0093623	RRM_1	PF00076.22	3e-44	1	3
MGP_AJ_P0093623	RRM_1	PF00076.22	3e-44	2	3
MGP_AJ_P0093623	RRM_1	PF00076.22	3e-44	3	3
MGP_AJ_P0093628	RRM_1	PF00076.22	4.7e-44	1	3
MGP_AJ_P0093628	RRM_1	PF00076.22	4.7e-44	2	3
MGP_AJ_P0093628	RRM_1	PF00076.22	4.7e-44	3	3
MGP_AJ_P0093625	RRM_1	PF00076.22	8.4e-43	1	3
MGP_AJ_P0093625	RRM_1	PF00076.22	8.4e-43	2	3
MGP_AJ_P0093625	RRM_1	PF00076.22	8.4e-43	3	3
MGP_AJ_P0093629	RRM_1	PF00076.22	1.3e-42	1	3
MGP_AJ_P0093629	RRM_1	PF00076.22	1.3e-42	2	3
MGP_AJ_P0093629	RRM_1	PF00076.22	1.3e-42	3	3
MGP_AJ_P0093624	RRM_1	PF00076.22	1.4e-31	1	2
MGP_AJ_P0093624	RRM_1	PF00076.22	1.4e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0093633	-	473	-	MGP_AJ_P0093633	94 (aa)	-	-
MGP_AJ_T0093632	-	2385	-	-	- (aa)	-	-
MGP_AJ_T0093623	-	9465	XM_006511293	MGP_AJ_P0093623	562 (aa)	XP_006511356	Q7TMK9
MGP_AJ_T0093626	-	3404	-	MGP_AJ_P0093626	561 (aa)	-	-
MGP_AJ_T0093627	-	1925	-	MGP_AJ_P0093627	67 (aa)	-	-
MGP_AJ_T0093624	-	3175	-	MGP_AJ_P0093624	448 (aa)	-	-
MGP_AJ_T0093625	-	3286	-	MGP_AJ_P0093625	527 (aa)	-	-
MGP_AJ_T0093631	-	766	-	MGP_AJ_P0093631	196 (aa)	-	-
MGP_AJ_T0093628	-	2421	-	MGP_AJ_P0093628	623 (aa)	-	-
MGP_AJ_T0093629	-	1767	-	MGP_AJ_P0093629	588 (aa)	-	-
MGP_AJ_T0093630	-	549	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0035090	Syncrip	58	52.308	MGP_AJ_G0025014	A1cf	52	53.398
MGP_AJ_G0035090	Syncrip	75	57.522	MGP_AJ_G0029555	Rbm47	88	58.451
MGP_AJ_G0035090	Syncrip	53	54.333	MGP_AJ_G0027293	Rbm46	63	55.000