EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AJ_G0035211 (Gene tree)
Gene ID: -
Gene Symbol: Pcbp4
Alias: 1200003L19Rik|AlphaCP-4
Full Name: poly(rC) binding protein 4
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Plus strand
Length: 10506 bases
Position: chr9:104349817-104360322
Accession: 1890471
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0094218	KH_1	PF00013.29	3.4e-50	1	3
MGP_AJ_P0094218	KH_1	PF00013.29	3.4e-50	2	3
MGP_AJ_P0094218	KH_1	PF00013.29	3.4e-50	3	3
MGP_AJ_P0094220	KH_1	PF00013.29	2.7e-32	1	2
MGP_AJ_P0094220	KH_1	PF00013.29	2.7e-32	2	2
MGP_AJ_P0094227	KH_1	PF00013.29	1.5e-21	1	1
MGP_AJ_P0094215	KH_1	PF00013.29	1.3e-18	1	1
MGP_AJ_P0094222	KH_1	PF00013.29	2.3e-15	1	1
MGP_AJ_P0094224	KH_1	PF00013.29	1.2e-13	1	1
MGP_AJ_P0094229	KH_1	PF00013.29	5.3e-09	1	1
MGP_AJ_P0094220	KH_2	PF07650.17	8.3e-12	1	1
MGP_AJ_P0094215	KH_2	PF07650.17	2.3e-06	1	1
MGP_AJ_P0094222	KH_2	PF07650.17	0.00014	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0094227	-	770	-	MGP_AJ_P0094227	168 (aa)	-	-
MGP_AJ_T0094226	-	289	-	-	- (aa)	-	-
MGP_AJ_T0094225	-	846	-	MGP_AJ_P0094225	150 (aa)	-	-
MGP_AJ_T0094224	-	232	-	MGP_AJ_P0094224	77 (aa)	-	-
MGP_AJ_T0094223	-	253	-	-	- (aa)	-	-
MGP_AJ_T0094222	-	752	-	MGP_AJ_P0094222	113 (aa)	-	-
MGP_AJ_T0094221	-	477	-	-	- (aa)	-	-
MGP_AJ_T0094220	-	893	-	MGP_AJ_P0094220	197 (aa)	-	-
MGP_AJ_T0094229	-	924	-	MGP_AJ_P0094229	215 (aa)	-	-
MGP_AJ_T0094228	-	314	-	-	- (aa)	-	-
MGP_AJ_T0094230	-	450	-	-	- (aa)	-	-
MGP_AJ_T0094218	-	1987	-	MGP_AJ_P0094218	403 (aa)	-	-
MGP_AJ_T0094219	-	378	-	-	- (aa)	-	-
MGP_AJ_T0094216	-	387	-	-	- (aa)	-	-
MGP_AJ_T0094217	-	599	-	-	- (aa)	-	-
MGP_AJ_T0094215	-	651	XM_006511779	MGP_AJ_P0094215	119 (aa)	XP_006511842	A0A087WP16

Gene Model

Click here to download MGP_AJ_G0035211's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AJ_G0035211's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0035211	Pcbp4	76	41.538	MGP_AJ_G0031725	Nova2	54	41.538
MGP_AJ_G0035211	Pcbp4	51	37.363	MGP_AJ_G0019678	Nova1	52	37.363
MGP_AJ_G0035211	Pcbp4	83	36.000	MGP_AJ_G0025564	Fubp3	70	36.000
MGP_AJ_G0035211	Pcbp4	93	70.652	MGP_AJ_G0017367	Pcbp3	85	69.811
MGP_AJ_G0035211	Pcbp4	84	32.039	MGP_AJ_G0018961	Igf2bp1	59	30.597
MGP_AJ_G0035211	Pcbp4	76	33.684	MGP_AJ_G0027947	Fubp1	72	34.524
MGP_AJ_G0035211	Pcbp4	98	66.321	MGP_AJ_G0022377	Pcbp2	97	59.877
MGP_AJ_G0035211	Pcbp4	76	32.323	MGP_AJ_G0023907	Khsrp	54	34.091
MGP_AJ_G0035211	Pcbp4	97	67.826	MGP_AJ_G0030944	Pcbp1	98	53.541
MGP_AJ_G0035211	Pcbp4	85	31.731	MGP_AJ_G0022628	Igf2bp2	62	31.111
MGP_AJ_G0035211	Pcbp4	86	31.551	MGP_AJ_G0036244	-	77	31.551
MGP_AJ_G0035211	Pcbp4	86	33.728	MGP_AJ_G0020587	Hnrnpk	78	32.414