EuRBPDB

Description

Ensembl ID: MGP_AJ_G0035667 (Gene tree)
Gene ID: -
Gene Symbol: Smarca1
Alias: 5730494M04Rik|Snf2l
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Mus_musculus_aj
Status: putative
Strand: Minus strand
Length: 76793 bases
Position: chrX:42802505-42879297
Accession: 1935127
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AJ_P0096101	ResIII	PF04851.15	4.3e-12	1	1
MGP_AJ_P0096100	ResIII	PF04851.15	1.1e-11	1	1
MGP_AJ_P0096098	ResIII	PF04851.15	1.8e-11	1	1
MGP_AJ_P0096097	ResIII	PF04851.15	1.9e-11	1	1
MGP_AJ_P0096099	ResIII	PF04851.15	1.9e-11	1	1
MGP_AJ_P0096097	DEAD	PF00270.29	1.2e-06	1	1
MGP_AJ_P0096099	DEAD	PF00270.29	1.2e-06	1	1
MGP_AJ_P0096098	DEAD	PF00270.29	1.3e-06	1	1
MGP_AJ_P0096101	DEAD	PF00270.29	2.4e-06	1	1
MGP_AJ_P0096100	DEAD	PF00270.29	3.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AJ_T0096097	-	4024	XM_006541563	MGP_AJ_P0096097	1046 (aa)	XP_006541626	Q6PGB8
MGP_AJ_T0096098	-	3991	-	MGP_AJ_P0096098	1062 (aa)	-	-
MGP_AJ_T0096099	-	4798	-	MGP_AJ_P0096099	1046 (aa)	-	-
MGP_AJ_T0096100	-	2304	-	MGP_AJ_P0096100	768 (aa)	-	-
MGP_AJ_T0096101	-	1965	-	MGP_AJ_P0096101	381 (aa)	-	-
MGP_AJ_T0096102	-	360	-	MGP_AJ_P0096102	117 (aa)	-	-
MGP_AJ_T0096103	-	409	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AJ_G0035667	Smarca1	71	30.490	MGP_AJ_G0020625	Ercc6l2	82	30.353
MGP_AJ_G0035667	Smarca1	75	42.044	MGP_AJ_G0027603	Chd1l	62	43.419
MGP_AJ_G0035667	Smarca1	72	45.247	MGP_AJ_G0025072	Hells	65	47.410
MGP_AJ_G0035667	Smarca1	61	32.031	MGP_AJ_G0028579	Rad54l	66	33.267
MGP_AJ_G0035667	Smarca1	68	31.661	MGP_AJ_G0028011	Rad54b	62	32.212