EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AKRJ_G0017425 (Gene tree)
Gene ID: -
Gene Symbol: Cirbp
Alias: Cirp|R74941
Full Name: cold inducible RNA binding protein
Gene Type: protein_coding
Species: Mus_musculus_akrj
Status: putative
Strand: Plus strand
Length: 7344 bases
Position: chr10:80056648-80063991
Accession: 893588
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AKRJ_P0026143	RRM_1	PF00076.22	5.1e-26	1	1
MGP_AKRJ_P0026145	RRM_1	PF00076.22	1.2e-25	1	1
MGP_AKRJ_P0026144	RRM_1	PF00076.22	1.3e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AKRJ_T0026143	-	423	XM_006513164	MGP_AKRJ_P0026143	108 (aa)	XP_006513227	P60824
MGP_AKRJ_T0026146	-	376	-	-	- (aa)	-	-
MGP_AKRJ_T0026147	-	912	-	-	- (aa)	-	-
MGP_AKRJ_T0026144	-	1321	-	MGP_AKRJ_P0026144	172 (aa)	-	-
MGP_AKRJ_T0026145	-	834	-	MGP_AKRJ_P0026145	168 (aa)	-	-
MGP_AKRJ_T0026148	-	894	-	-	- (aa)	-	-
MGP_AKRJ_T0026149	-	593	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_AKRJ_G0017425's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AKRJ_G0017425's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AKRJ_G0017425	Cirbp	92	43.243	MGP_AKRJ_G0018862	Msi2	61	43.243
MGP_AKRJ_G0017425	Cirbp	92	42.105	MGP_AKRJ_G0017431	Dazap1	74	47.273
MGP_AKRJ_G0017425	Cirbp	80	41.860	MGP_AKRJ_G0025802	Hnrnpa3	57	44.737
MGP_AKRJ_G0017425	Cirbp	79	63.529	MGP_AKRJ_G0035651	Rbmx	83	63.529
MGP_AKRJ_G0017425	Cirbp	73	36.709	MGP_AKRJ_G0029694	Hnrnpdl	54	36.709
MGP_AKRJ_G0017425	Cirbp	83	37.113	MGP_AKRJ_G0029692	Hnrnpd	84	36.559
MGP_AKRJ_G0017425	Cirbp	79	62.353	MGP_AKRJ_G0033715	-	72	55.455
MGP_AKRJ_G0017425	Cirbp	73	37.975	MGP_AKRJ_G0028861	-	60	38.542
MGP_AKRJ_G0017425	Cirbp	81	30.682	MGP_AKRJ_G0021827	-	63	30.682
MGP_AKRJ_G0017425	Cirbp	91	39.759	MGP_AKRJ_G0026771	Pabpc1l	53	39.759
MGP_AKRJ_G0017425	Cirbp	99	60.588	MGP_AKRJ_G0035451	Rbm3	100	63.529
MGP_AKRJ_G0017425	Cirbp	82	33.333	MGP_AKRJ_G0033245	Elavl1	75	33.333
MGP_AKRJ_G0017425	Cirbp	68	34.247	MGP_AKRJ_G0021332	Pspc1	69	41.304
MGP_AKRJ_G0017425	Cirbp	85	40.244	MGP_AKRJ_G0032997	Tial1	67	40.244
MGP_AKRJ_G0017425	Cirbp	85	38.043	MGP_AKRJ_G0022663	Ncbp2	54	36.471
MGP_AKRJ_G0017425	Cirbp	80	32.558	MGP_AKRJ_G0025277	Celf2	82	33.333
MGP_AKRJ_G0017425	Cirbp	87	40.351	MGP_AKRJ_G0029872	Msi1	51	38.983
MGP_AKRJ_G0017425	Cirbp	78	40.476	MGP_AKRJ_G0026890	Rbm38	74	38.043
MGP_AKRJ_G0017425	Cirbp	81	32.955	MGP_AKRJ_G0023379	-	67	32.955
MGP_AKRJ_G0017425	Cirbp	70	44.737	MGP_AKRJ_G0030630	Hnrnpa2b1	50	44.737
MGP_AKRJ_G0017425	Cirbp	84	38.889	MGP_AKRJ_G0028486	Elavl4	70	38.889
MGP_AKRJ_G0017425	Cirbp	84	31.868	MGP_AKRJ_G0026750	Srsf6	61	31.868
MGP_AKRJ_G0017425	Cirbp	94	38.614	MGP_AKRJ_G0020559	Hnrnpa0	57	43.421
MGP_AKRJ_G0017425	Cirbp	76	37.500	MGP_AKRJ_G0028355	Elavl2	64	37.500
MGP_AKRJ_G0017425	Cirbp	79	37.500	MGP_AKRJ_G0034378	Elavl3	62	37.500
MGP_AKRJ_G0017425	Cirbp	91	35.714	MGP_AKRJ_G0030872	Tia1	80	37.778