EuRBPDB

Description

Ensembl ID: MGP_AKRJ_G0018187 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnph1
Alias: AI642080|E430005G16Rik|Hnrnph|Hnrph|Hnrph1|Hnrph1 {ECO:0000313|EMBL:AAH42187.2,GN ECO:0000313|MGI:MGI:1891925}
Full Name: heterogeneous nuclear ribonucleoprotein H1
Gene Type: protein_coding
Species: Mus_musculus_akrj
Status: putative
Strand: Plus strand
Length: 9705 bases
Position: chr11:49171348-49181052
Accession: 1891925
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AKRJ_P0028793	zf-RNPHF	PF08080.12	1.3e-22	1	1
MGP_AKRJ_P0028794	zf-RNPHF	PF08080.12	1.3e-22	1	1
MGP_AKRJ_P0028799	zf-RNPHF	PF08080.12	1.5e-22	1	1
MGP_AKRJ_P0028793	RRM_1	PF00076.22	2.1e-32	1	3
MGP_AKRJ_P0028793	RRM_1	PF00076.22	2.1e-32	2	3
MGP_AKRJ_P0028793	RRM_1	PF00076.22	2.1e-32	3	3
MGP_AKRJ_P0028794	RRM_1	PF00076.22	2.1e-32	1	3
MGP_AKRJ_P0028794	RRM_1	PF00076.22	2.1e-32	2	3
MGP_AKRJ_P0028794	RRM_1	PF00076.22	2.1e-32	3	3
MGP_AKRJ_P0028799	RRM_1	PF00076.22	2.6e-32	1	3
MGP_AKRJ_P0028799	RRM_1	PF00076.22	2.6e-32	2	3
MGP_AKRJ_P0028799	RRM_1	PF00076.22	2.6e-32	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AKRJ_T0028810	-	677	-	-	- (aa)	-	-
MGP_AKRJ_T0028809	-	816	-	-	- (aa)	-	-
MGP_AKRJ_T0028808	-	159	-	-	- (aa)	-	-
MGP_AKRJ_T0028805	-	582	-	-	- (aa)	-	-
MGP_AKRJ_T0028793	-	2427	XM_006533875	MGP_AKRJ_P0028793	449 (aa)	XP_006533938	O35737
MGP_AKRJ_T0028804	-	832	-	-	- (aa)	-	-
MGP_AKRJ_T0028795	-	4577	-	-	- (aa)	-	-
MGP_AKRJ_T0028794	-	2391	-	MGP_AKRJ_P0028794	449 (aa)	-	-
MGP_AKRJ_T0028797	-	4002	-	-	- (aa)	-	-
MGP_AKRJ_T0028796	-	581	-	-	- (aa)	-	-
MGP_AKRJ_T0028799	-	2292	-	MGP_AKRJ_P0028799	472 (aa)	-	-
MGP_AKRJ_T0028798	-	870	-	-	- (aa)	-	-
MGP_AKRJ_T0028807	-	163	-	-	- (aa)	-	-
MGP_AKRJ_T0028806	-	914	-	-	- (aa)	-	-
MGP_AKRJ_T0028801	-	860	-	-	- (aa)	-	-
MGP_AKRJ_T0028800	-	1116	-	-	- (aa)	-	-
MGP_AKRJ_T0028803	-	1724	-	-	- (aa)	-	-
MGP_AKRJ_T0028802	-	582	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AKRJ_G0018187	Hnrnph1	60	64.474	MGP_AKRJ_G0029623	Grsf1	92	65.333
MGP_AKRJ_G0018187	Hnrnph1	90	60.923	MGP_AKRJ_G0017248	Hnrnph3	99	59.673
MGP_AKRJ_G0018187	Hnrnph1	79	81.006	MGP_AKRJ_G0031080	-	100	79.755
MGP_AKRJ_G0018187	Hnrnph1	100	95.100	MGP_AKRJ_G0035975	Hnrnph2	100	95.100
MGP_AKRJ_G0018187	Hnrnph1	78	34.314	MGP_AKRJ_G0027985	-	54	34.314