EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AKRJ_G0021736 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc1
Alias: PABP|Pabp1|PabpI|Pabpl1|ePAB
Full Name: poly(A) binding protein%2C cytoplasmic 1
Gene Type: protein_coding
Species: Mus_musculus_akrj
Status: putative
Strand: Minus strand
Length: 13101 bases
Position: chr15:34620133-34633233
Accession: 1349722
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AKRJ_P0040731	PABP	PF00658.18	8.8e-33	1	1
MGP_AKRJ_P0040730	PABP	PF00658.18	7.5e-32	1	1
MGP_AKRJ_P0040730	RRM_5	PF13893.6	2.4e-08	1	2
MGP_AKRJ_P0040730	RRM_5	PF13893.6	2.4e-08	2	2
MGP_AKRJ_P0040730	RRM_1	PF00076.22	1.4e-90	1	4
MGP_AKRJ_P0040730	RRM_1	PF00076.22	1.4e-90	2	4
MGP_AKRJ_P0040730	RRM_1	PF00076.22	1.4e-90	3	4
MGP_AKRJ_P0040730	RRM_1	PF00076.22	1.4e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AKRJ_T0040735	-	747	-	-	- (aa)	-	-
MGP_AKRJ_T0040734	-	866	-	-	- (aa)	-	-
MGP_AKRJ_T0040736	-	2813	-	-	- (aa)	-	-
MGP_AKRJ_T0040731	-	527	-	MGP_AKRJ_P0040731	117 (aa)	-	-
MGP_AKRJ_T0040730	-	2708	XM_011245339	MGP_AKRJ_P0040730	636 (aa)	XP_011243641	P29341
MGP_AKRJ_T0040733	-	632	-	-	- (aa)	-	-
MGP_AKRJ_T0040732	-	725	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_AKRJ_G0021736's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AKRJ_G0021736's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AKRJ_G0021736	Pabpc1	58	37.349	MGP_AKRJ_G0028355	Elavl2	89	37.349
MGP_AKRJ_G0021736	Pabpc1	52	39.759	MGP_AKRJ_G0017499	Celf5	71	39.759
MGP_AKRJ_G0021736	Pabpc1	98	61.635	MGP_AKRJ_G0026771	Pabpc1l	99	61.478
MGP_AKRJ_G0021736	Pabpc1	51	34.884	MGP_AKRJ_G0025277	Celf2	57	35.714
MGP_AKRJ_G0021736	Pabpc1	57	32.450	MGP_AKRJ_G0033245	Elavl1	95	32.450
MGP_AKRJ_G0021736	Pabpc1	59	67.493	MGP_AKRJ_G0027119	Pabpc4l	97	69.277
MGP_AKRJ_G0021736	Pabpc1	56	34.783	MGP_AKRJ_G0032997	Tial1	94	31.008
MGP_AKRJ_G0021736	Pabpc1	66	88.889	MGP_AKRJ_G0026976	-	73	88.889
MGP_AKRJ_G0021736	Pabpc1	58	36.145	MGP_AKRJ_G0028486	Elavl4	88	36.145
MGP_AKRJ_G0021736	Pabpc1	100	80.346	MGP_AKRJ_G0024305	Pabpc2	100	80.346
MGP_AKRJ_G0021736	Pabpc1	58	34.667	MGP_AKRJ_G0029903	Rbm19	62	34.667
MGP_AKRJ_G0021736	Pabpc1	58	36.145	MGP_AKRJ_G0034378	Elavl3	92	36.145
MGP_AKRJ_G0021736	Pabpc1	58	64.607	MGP_AKRJ_G0035943	Pabpc5	95	64.463
MGP_AKRJ_G0021736	Pabpc1	99	80.186	MGP_AKRJ_G0023071	Pabpc6	99	80.341
MGP_AKRJ_G0021736	Pabpc1	98	78.331	MGP_AKRJ_G0028651	Pabpc4	100	94.175
MGP_AKRJ_G0021736	Pabpc1	57	38.095	MGP_AKRJ_G0030872	Tia1	87	38.095