EuRBPDB

Description

Ensembl ID: MGP_AKRJ_G0023532 (Gene tree)
Gene ID: -
Gene Symbol: Lsm2
Alias: D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|Sm-X5GN|SmX5|snRNP
Full Name: LSM2 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Mus_musculus_akrj
Status: putative
Strand: Plus strand
Length: 4030 bases
Position: chr17:34422996-34427025
Accession: 90676
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AKRJ_P0047204	LSM	PF01423.22	1.1e-16	1	1
MGP_AKRJ_P0047207	LSM	PF01423.22	2.7e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AKRJ_T0047203	-	1586	-	-	- (aa)	-	-
MGP_AKRJ_T0047204	-	840	-	MGP_AKRJ_P0047204	95 (aa)	-	-
MGP_AKRJ_T0047205	-	521	-	-	- (aa)	-	-
MGP_AKRJ_T0047206	-	368	-	-	- (aa)	-	-
MGP_AKRJ_T0047207	-	873	-	MGP_AKRJ_P0047207	131 (aa)	-	-
MGP_AKRJ_T0047208	-	687	-	-	- (aa)	-	-
MGP_AKRJ_T0047209	-	653	-	-	- (aa)	-	-
MGP_AKRJ_T0047213	-	1066	-	-	- (aa)	-	-
MGP_AKRJ_T0047212	-	528	-	-	- (aa)	-	-
MGP_AKRJ_T0047211	-	691	-	-	- (aa)	-	-
MGP_AKRJ_T0047210	-	870	-	MGP_AKRJ_P0047210	85 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AKRJ_G0023532	Lsm2	92	34.831	MGP_AKRJ_G0033626	Lsm4	70	35.644
MGP_AKRJ_G0023532	Lsm2	77	31.507	MGP_AKRJ_G0028682	Lsm10	75	31.507