EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AKRJ_G0023561 (Gene tree)
Gene ID: -
Gene Symbol: Ddx39b
Alias: 0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh|Uap56
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
Gene Type: protein_coding
Species: Mus_musculus_akrj
Status: putative
Strand: Plus strand
Length: 11717 bases
Position: chr17:34692027-34703743
Accession: 99240
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AKRJ_P0047336	ResIII	PF04851.15	1.5e-07	1	1
MGP_AKRJ_P0047337	ResIII	PF04851.15	2.3e-07	1	1
MGP_AKRJ_P0047339	ResIII	PF04851.15	2.3e-07	1	1
MGP_AKRJ_P0047341	ResIII	PF04851.15	2.3e-07	1	1
MGP_AKRJ_P0047336	DEAD	PF00270.29	8.1e-39	1	1
MGP_AKRJ_P0047337	DEAD	PF00270.29	1.2e-38	1	1
MGP_AKRJ_P0047339	DEAD	PF00270.29	1.2e-38	1	1
MGP_AKRJ_P0047341	DEAD	PF00270.29	1.2e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AKRJ_T0047341	-	1766	-	MGP_AKRJ_P0047341	428 (aa)	-	-
MGP_AKRJ_T0047340	-	740	-	-	- (aa)	-	-
MGP_AKRJ_T0047336	-	1211	-	MGP_AKRJ_P0047336	324 (aa)	-	Q9Z1N5
MGP_AKRJ_T0047337	-	1735	-	MGP_AKRJ_P0047337	428 (aa)	-	-
MGP_AKRJ_T0047338	-	1710	-	-	- (aa)	-	-
MGP_AKRJ_T0047339	-	2845	-	MGP_AKRJ_P0047339	428 (aa)	-	-

Gene Model

Click here to download MGP_AKRJ_G0023561's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AKRJ_G0023561's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AKRJ_G0023561	Ddx39b	91	32.353	MGP_AKRJ_G0034039	Ddx19b	82	32.353
MGP_AKRJ_G0023561	Ddx39b	91	31.894	MGP_AKRJ_G0034038	Ddx19a	83	31.894
MGP_AKRJ_G0023561	Ddx39b	84	31.903	MGP_AKRJ_G0034440	Ddx25	82	32.020
MGP_AKRJ_G0023561	Ddx39b	85	38.356	MGP_AKRJ_G0019416	Eif4a3	88	38.356
MGP_AKRJ_G0023561	Ddx39b	77	30.029	MGP_AKRJ_G0019250	Ddx5	59	30.029
MGP_AKRJ_G0023561	Ddx39b	63	30.804	MGP_AKRJ_G0016865	D1Pas1	57	30.105
MGP_AKRJ_G0023561	Ddx39b	88	34.037	MGP_AKRJ_G0031315	Ddx47	90	31.926
MGP_AKRJ_G0023561	Ddx39b	100	90.888	MGP_AKRJ_G0033748	Ddx39	100	90.888
MGP_AKRJ_G0023561	Ddx39b	92	36.802	MGP_AKRJ_G0018483	Eif4a1	95	36.802
MGP_AKRJ_G0023561	Ddx39b	86	32.891	MGP_AKRJ_G0033607	Ddx49	98	32.213
MGP_AKRJ_G0023561	Ddx39b	86	38.919	MGP_AKRJ_G0022614	Eif4a2	90	38.919
MGP_AKRJ_G0023561	Ddx39b	84	32.970	MGP_AKRJ_G0026844	Ddx27	54	31.655