EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AKRJ_G0026747 (Gene tree)
Gene ID: -
Gene Symbol: Chd6
Alias: 5430439G14Rik|6330406J24Rik|CHD-6|Kiaa1335
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Mus_musculus_akrj
Status: putative
Strand: Minus strand
Length: 171193 bases
Position: chr2:164193627-164364819
Accession: 1918639
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AKRJ_P0058970	ResIII	PF04851.15	4.2e-08	1	1
MGP_AKRJ_P0058966	ResIII	PF04851.15	2.6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AKRJ_T0058972	-	3092	-	-	- (aa)	-	-
MGP_AKRJ_T0058973	-	616	-	-	- (aa)	-	-
MGP_AKRJ_T0058970	-	3608	-	MGP_AKRJ_P0058970	1183 (aa)	-	-
MGP_AKRJ_T0058971	-	601	-	-	- (aa)	-	-
MGP_AKRJ_T0058976	-	5051	-	-	- (aa)	-	-
MGP_AKRJ_T0058974	-	646	-	-	- (aa)	-	-
MGP_AKRJ_T0058967	-	735	-	-	- (aa)	-	-
MGP_AKRJ_T0058966	-	10515	XM_006500181	MGP_AKRJ_P0058966	2711 (aa)	XP_011238078	A3KFM7
MGP_AKRJ_T0058969	-	3970	-	-	- (aa)	-	-
MGP_AKRJ_T0058968	-	764	-	-	- (aa)	-	-
MGP_AKRJ_T0058975	-	675	-	MGP_AKRJ_P0058975	217 (aa)	-	-

Gene Model

Click here to download MGP_AKRJ_G0026747's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AKRJ_G0026747's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AKRJ_G0026747	Chd6	61	37.625	MGP_AKRJ_G0032284	Chd2	63	32.583
MGP_AKRJ_G0026747	Chd6	87	68.979	MGP_AKRJ_G0033836	Chd9	72	62.298
MGP_AKRJ_G0026747	Chd6	66	36.621	MGP_AKRJ_G0029094	Chd5	51	34.657
MGP_AKRJ_G0026747	Chd6	84	72.837	MGP_AKRJ_G0027964	Chd7	72	64.905