EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AKRJ_G0027119 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc4l
Alias: C330050A14Rik|EG241989
Full Name: poly(A) binding protein%2C cytoplasmic 4-like
Gene Type: protein_coding
Species: Mus_musculus_akrj
Status: putative
Strand: Minus strand
Length: 6027 bases
Position: chr3:44321566-44327592
Accession: 3643087
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AKRJ_P0060667	RRM_5	PF13893.6	1.6e-13	1	3
MGP_AKRJ_P0060667	RRM_5	PF13893.6	1.6e-13	2	3
MGP_AKRJ_P0060667	RRM_5	PF13893.6	1.6e-13	3	3
MGP_AKRJ_P0060668	RRM_5	PF13893.6	1.6e-13	1	3
MGP_AKRJ_P0060668	RRM_5	PF13893.6	1.6e-13	2	3
MGP_AKRJ_P0060668	RRM_5	PF13893.6	1.6e-13	3	3
MGP_AKRJ_P0060667	RRM_1	PF00076.22	4.7e-83	1	4
MGP_AKRJ_P0060667	RRM_1	PF00076.22	4.7e-83	2	4
MGP_AKRJ_P0060667	RRM_1	PF00076.22	4.7e-83	3	4
MGP_AKRJ_P0060667	RRM_1	PF00076.22	4.7e-83	4	4
MGP_AKRJ_P0060668	RRM_1	PF00076.22	4.7e-83	1	4
MGP_AKRJ_P0060668	RRM_1	PF00076.22	4.7e-83	2	4
MGP_AKRJ_P0060668	RRM_1	PF00076.22	4.7e-83	3	4
MGP_AKRJ_P0060668	RRM_1	PF00076.22	4.7e-83	4	4
MGP_AKRJ_P0060669	RRM_1	PF00076.22	1.8e-40	1	2
MGP_AKRJ_P0060669	RRM_1	PF00076.22	1.8e-40	2	2
MGP_AKRJ_P0060670	RRM_1	PF00076.22	2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AKRJ_T0060667	-	5256	XM_006500774	MGP_AKRJ_P0060667	370 (aa)	XP_006500837	A0A0A6YWT2
MGP_AKRJ_T0060669	-	724	-	MGP_AKRJ_P0060669	172 (aa)	-	-
MGP_AKRJ_T0060668	-	5222	-	MGP_AKRJ_P0060668	370 (aa)	-	-
MGP_AKRJ_T0060670	-	468	-	MGP_AKRJ_P0060670	50 (aa)	-	-

Gene Model

Click here to download MGP_AKRJ_G0027119's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AKRJ_G0027119's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AKRJ_G0027119	Pabpc4l	89	31.875	MGP_AKRJ_G0028780	Trnau1ap	88	34.211
MGP_AKRJ_G0027119	Pabpc4l	97	69.277	MGP_AKRJ_G0021736	Pabpc1	59	67.493
MGP_AKRJ_G0027119	Pabpc4l	94	30.464	MGP_AKRJ_G0033245	Elavl1	91	30.464
MGP_AKRJ_G0027119	Pabpc4l	95	60.736	MGP_AKRJ_G0026771	Pabpc1l	59	60.736
MGP_AKRJ_G0027119	Pabpc4l	83	34.286	MGP_AKRJ_G0035451	Rbm3	90	35.385
MGP_AKRJ_G0027119	Pabpc4l	98	64.497	MGP_AKRJ_G0023071	Pabpc6	58	64.497
MGP_AKRJ_G0027119	Pabpc4l	52	31.461	MGP_AKRJ_G0028861	-	54	32.558
MGP_AKRJ_G0027119	Pabpc4l	96	34.940	MGP_AKRJ_G0028355	Elavl2	89	34.940
MGP_AKRJ_G0027119	Pabpc4l	98	70.552	MGP_AKRJ_G0028651	Pabpc4	100	69.000
MGP_AKRJ_G0027119	Pabpc4l	94	33.333	MGP_AKRJ_G0032997	Tial1	99	31.618
MGP_AKRJ_G0027119	Pabpc4l	97	57.865	MGP_AKRJ_G0035943	Pabpc5	96	57.967
MGP_AKRJ_G0027119	Pabpc4l	95	30.539	MGP_AKRJ_G0030872	Tia1	95	30.000
MGP_AKRJ_G0027119	Pabpc4l	96	36.145	MGP_AKRJ_G0034378	Elavl3	90	36.145
MGP_AKRJ_G0027119	Pabpc4l	96	30.065	MGP_AKRJ_G0028486	Elavl4	70	35.484
MGP_AKRJ_G0027119	Pabpc4l	95	68.098	MGP_AKRJ_G0024305	Pabpc2	61	64.167
MGP_AKRJ_G0027119	Pabpc4l	65	34.211	MGP_AKRJ_G0026079	Celf1	57	37.879