EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AKRJ_G0028486 (Gene tree)
Gene ID: -
Gene Symbol: Elavl4
Alias: Elav|Hud|PNEM
Full Name: ELAV (embryonic lethal%2C abnormal vision%2C Drosophila)-like 4 (Hu antigen D)
Gene Type: protein_coding
Species: Mus_musculus_akrj
Status: putative
Strand: Minus strand
Length: 150834 bases
Position: chr4:109686055-109836888
Accession: 107427
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AKRJ_P0066904	RRM_5	PF13893.6	2.8e-13	1	2
MGP_AKRJ_P0066904	RRM_5	PF13893.6	2.8e-13	2	2
MGP_AKRJ_P0066901	RRM_5	PF13893.6	3.1e-13	1	2
MGP_AKRJ_P0066901	RRM_5	PF13893.6	3.1e-13	2	2
MGP_AKRJ_P0066902	RRM_5	PF13893.6	3.2e-13	1	2
MGP_AKRJ_P0066902	RRM_5	PF13893.6	3.2e-13	2	2
MGP_AKRJ_P0066907	RRM_5	PF13893.6	3.4e-13	1	2
MGP_AKRJ_P0066907	RRM_5	PF13893.6	3.4e-13	2	2
MGP_AKRJ_P0066905	RRM_5	PF13893.6	3.6e-13	1	2
MGP_AKRJ_P0066905	RRM_5	PF13893.6	3.6e-13	2	2
MGP_AKRJ_P0066903	RRM_5	PF13893.6	3.9e-13	1	2
MGP_AKRJ_P0066903	RRM_5	PF13893.6	3.9e-13	2	2
MGP_AKRJ_P0066906	RRM_5	PF13893.6	4e-13	1	2
MGP_AKRJ_P0066906	RRM_5	PF13893.6	4e-13	2	2
MGP_AKRJ_P0066904	RRM_1	PF00076.22	2.1e-65	1	3
MGP_AKRJ_P0066904	RRM_1	PF00076.22	2.1e-65	2	3
MGP_AKRJ_P0066904	RRM_1	PF00076.22	2.1e-65	3	3
MGP_AKRJ_P0066902	RRM_1	PF00076.22	2.4e-65	1	3
MGP_AKRJ_P0066902	RRM_1	PF00076.22	2.4e-65	2	3
MGP_AKRJ_P0066902	RRM_1	PF00076.22	2.4e-65	3	3
MGP_AKRJ_P0066901	RRM_1	PF00076.22	2.4e-65	1	3
MGP_AKRJ_P0066901	RRM_1	PF00076.22	2.4e-65	2	3
MGP_AKRJ_P0066901	RRM_1	PF00076.22	2.4e-65	3	3
MGP_AKRJ_P0066907	RRM_1	PF00076.22	2.5e-65	1	3
MGP_AKRJ_P0066907	RRM_1	PF00076.22	2.5e-65	2	3
MGP_AKRJ_P0066907	RRM_1	PF00076.22	2.5e-65	3	3
MGP_AKRJ_P0066905	RRM_1	PF00076.22	2.9e-65	1	3
MGP_AKRJ_P0066905	RRM_1	PF00076.22	2.9e-65	2	3
MGP_AKRJ_P0066905	RRM_1	PF00076.22	2.9e-65	3	3
MGP_AKRJ_P0066903	RRM_1	PF00076.22	2.9e-65	1	3
MGP_AKRJ_P0066903	RRM_1	PF00076.22	2.9e-65	2	3
MGP_AKRJ_P0066903	RRM_1	PF00076.22	2.9e-65	3	3
MGP_AKRJ_P0066906	RRM_1	PF00076.22	3e-65	1	3
MGP_AKRJ_P0066906	RRM_1	PF00076.22	3e-65	2	3
MGP_AKRJ_P0066906	RRM_1	PF00076.22	3e-65	3	3
MGP_AKRJ_P0066909	RRM_1	PF00076.22	1.2e-20	1	1
MGP_AKRJ_P0066911	RRM_1	PF00076.22	6.8e-13	1	1
MGP_AKRJ_P0066912	RRM_1	PF00076.22	9.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AKRJ_T0066912	-	488	-	MGP_AKRJ_P0066912	92 (aa)	-	-
MGP_AKRJ_T0066911	-	663	-	MGP_AKRJ_P0066911	94 (aa)	-	-
MGP_AKRJ_T0066908	-	869	-	-	- (aa)	-	-
MGP_AKRJ_T0066909	-	644	-	MGP_AKRJ_P0066909	137 (aa)	-	-
MGP_AKRJ_T0066910	-	464	-	-	- (aa)	-	-
MGP_AKRJ_T0066902	-	3775	-	MGP_AKRJ_P0066902	366 (aa)	-	-
MGP_AKRJ_T0066903	-	3799	-	MGP_AKRJ_P0066903	383 (aa)	-	-
MGP_AKRJ_T0066901	-	3997	XM_006502793	MGP_AKRJ_P0066901	366 (aa)	XP_006502856	Q61701
MGP_AKRJ_T0066906	-	4149	-	MGP_AKRJ_P0066906	385 (aa)	-	-
MGP_AKRJ_T0066907	-	4107	-	MGP_AKRJ_P0066907	371 (aa)	-	-
MGP_AKRJ_T0066904	-	3761	-	MGP_AKRJ_P0066904	356 (aa)	-	-
MGP_AKRJ_T0066905	-	4024	-	MGP_AKRJ_P0066905	380 (aa)	-	-

Gene Model

Click here to download MGP_AKRJ_G0028486's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AKRJ_G0028486's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AKRJ_G0028486	Elavl4	54	33.784	MGP_AKRJ_G0016789	Rbm8a2	61	30.693
MGP_AKRJ_G0028486	Elavl4	94	35.897	MGP_AKRJ_G0030872	Tia1	98	32.895
MGP_AKRJ_G0028486	Elavl4	81	38.272	MGP_AKRJ_G0025277	Celf2	61	38.272
MGP_AKRJ_G0028486	Elavl4	70	38.889	MGP_AKRJ_G0017425	Cirbp	84	38.889
MGP_AKRJ_G0028486	Elavl4	87	30.921	MGP_AKRJ_G0028651	Pabpc4	98	35.294
MGP_AKRJ_G0028486	Elavl4	70	35.484	MGP_AKRJ_G0027119	Pabpc4l	96	30.065
MGP_AKRJ_G0028486	Elavl4	88	34.940	MGP_AKRJ_G0024305	Pabpc2	59	34.940
MGP_AKRJ_G0028486	Elavl4	74	37.500	MGP_AKRJ_G0017499	Celf5	89	30.120
MGP_AKRJ_G0028486	Elavl4	66	42.373	MGP_AKRJ_G0017431	Dazap1	64	30.275
MGP_AKRJ_G0028486	Elavl4	70	36.458	MGP_AKRJ_G0025710	Rbms1	53	32.773
MGP_AKRJ_G0028486	Elavl4	70	36.458	MGP_AKRJ_G0035314	Rbms3	83	37.097
MGP_AKRJ_G0028486	Elavl4	58	31.646	MGP_AKRJ_G0035451	Rbm3	82	38.710
MGP_AKRJ_G0028486	Elavl4	74	33.708	MGP_AKRJ_G0035651	Rbmx	86	33.708
MGP_AKRJ_G0028486	Elavl4	99	79.893	MGP_AKRJ_G0034378	Elavl3	99	80.323
MGP_AKRJ_G0028486	Elavl4	88	36.145	MGP_AKRJ_G0021736	Pabpc1	58	36.145
MGP_AKRJ_G0028486	Elavl4	88	38.272	MGP_AKRJ_G0024143	Celf4	91	35.802
MGP_AKRJ_G0028486	Elavl4	85	40.741	MGP_AKRJ_G0027480	Celf3	61	40.741
MGP_AKRJ_G0028486	Elavl4	78	40.741	MGP_AKRJ_G0026079	Celf1	62	40.741
MGP_AKRJ_G0028486	Elavl4	89	73.585	MGP_AKRJ_G0033245	Elavl1	98	73.585
MGP_AKRJ_G0028486	Elavl4	88	32.468	MGP_AKRJ_G0023071	Pabpc6	60	32.468
MGP_AKRJ_G0028486	Elavl4	67	34.118	MGP_AKRJ_G0033715	-	58	33.708
MGP_AKRJ_G0028486	Elavl4	57	37.037	MGP_AKRJ_G0029998	Snrnp35	59	33.803
MGP_AKRJ_G0028486	Elavl4	54	33.784	MGP_AKRJ_G0027553	Rbm8a	62	30.693
MGP_AKRJ_G0028486	Elavl4	89	33.735	MGP_AKRJ_G0026771	Pabpc1l	62	33.735
MGP_AKRJ_G0028486	Elavl4	72	35.821	MGP_AKRJ_G0030618	Tra2a	59	37.097
MGP_AKRJ_G0028486	Elavl4	78	30.088	MGP_AKRJ_G0018862	Msi2	84	30.208
MGP_AKRJ_G0028486	Elavl4	88	35.897	MGP_AKRJ_G0032997	Tial1	73	35.897
MGP_AKRJ_G0028486	Elavl4	99	89.315	MGP_AKRJ_G0028355	Elavl2	100	89.751
MGP_AKRJ_G0028486	Elavl4	85	40.741	MGP_AKRJ_G0034812	Celf6	95	35.802