EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AKRJ_G0028651 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc4
Alias: -
Full Name: poly(A) binding protein%2C cytoplasmic 4
Gene Type: protein_coding
Species: Mus_musculus_akrj
Status: putative
Strand: Plus strand
Length: 38806 bases
Position: chr4:123063518-123102323
Accession: 2385206
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AKRJ_P0067603	PABP	PF00658.18	2.7e-31	1	1
MGP_AKRJ_P0067599	PABP	PF00658.18	2.8e-31	1	1
MGP_AKRJ_P0067600	PABP	PF00658.18	3e-31	1	1
MGP_AKRJ_P0067602	PABP	PF00658.18	3.2e-31	1	1
MGP_AKRJ_P0067603	RRM_5	PF13893.6	6e-09	1	2
MGP_AKRJ_P0067603	RRM_5	PF13893.6	6e-09	2	2
MGP_AKRJ_P0067599	RRM_5	PF13893.6	6.8e-09	1	2
MGP_AKRJ_P0067599	RRM_5	PF13893.6	6.8e-09	2	2
MGP_AKRJ_P0067600	RRM_5	PF13893.6	7.7e-09	1	2
MGP_AKRJ_P0067600	RRM_5	PF13893.6	7.7e-09	2	2
MGP_AKRJ_P0067602	RRM_5	PF13893.6	8.8e-09	1	1
MGP_AKRJ_P0067603	RRM_1	PF00076.22	3.9e-90	1	4
MGP_AKRJ_P0067603	RRM_1	PF00076.22	3.9e-90	2	4
MGP_AKRJ_P0067603	RRM_1	PF00076.22	3.9e-90	3	4
MGP_AKRJ_P0067603	RRM_1	PF00076.22	3.9e-90	4	4
MGP_AKRJ_P0067599	RRM_1	PF00076.22	4.6e-90	1	4
MGP_AKRJ_P0067599	RRM_1	PF00076.22	4.6e-90	2	4
MGP_AKRJ_P0067599	RRM_1	PF00076.22	4.6e-90	3	4
MGP_AKRJ_P0067599	RRM_1	PF00076.22	4.6e-90	4	4
MGP_AKRJ_P0067600	RRM_1	PF00076.22	5.1e-90	1	4
MGP_AKRJ_P0067600	RRM_1	PF00076.22	5.1e-90	2	4
MGP_AKRJ_P0067600	RRM_1	PF00076.22	5.1e-90	3	4
MGP_AKRJ_P0067600	RRM_1	PF00076.22	5.1e-90	4	4
MGP_AKRJ_P0067602	RRM_1	PF00076.22	5.8e-90	1	4
MGP_AKRJ_P0067602	RRM_1	PF00076.22	5.8e-90	2	4
MGP_AKRJ_P0067602	RRM_1	PF00076.22	5.8e-90	3	4
MGP_AKRJ_P0067602	RRM_1	PF00076.22	5.8e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AKRJ_T0067602	-	3030	-	MGP_AKRJ_P0067602	651 (aa)	-	-
MGP_AKRJ_T0067603	-	2711	-	MGP_AKRJ_P0067603	606 (aa)	-	-
MGP_AKRJ_T0067600	-	3061	-	MGP_AKRJ_P0067600	635 (aa)	-	-
MGP_AKRJ_T0067601	-	2646	-	MGP_AKRJ_P0067601	103 (aa)	-	-
MGP_AKRJ_T0067604	-	692	-	-	- (aa)	-	-
MGP_AKRJ_T0067605	-	1157	-	-	- (aa)	-	-
MGP_AKRJ_T0067598	-	245	-	-	- (aa)	-	-
MGP_AKRJ_T0067599	-	3122	-	MGP_AKRJ_P0067599	622 (aa)	-	-

Gene Model

Click here to download MGP_AKRJ_G0028651's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AKRJ_G0028651's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AKRJ_G0028651	Pabpc4	100	69.000	MGP_AKRJ_G0027119	Pabpc4l	98	70.552
MGP_AKRJ_G0028651	Pabpc4	68	37.500	MGP_AKRJ_G0035451	Rbm3	87	40.000
MGP_AKRJ_G0028651	Pabpc4	100	78.641	MGP_AKRJ_G0026771	Pabpc1l	98	61.944
MGP_AKRJ_G0028651	Pabpc4	68	34.722	MGP_AKRJ_G0033715	-	52	36.364
MGP_AKRJ_G0028651	Pabpc4	67	35.211	MGP_AKRJ_G0034812	Celf6	68	37.113
MGP_AKRJ_G0028651	Pabpc4	100	36.765	MGP_AKRJ_G0033245	Elavl1	95	33.553
MGP_AKRJ_G0028651	Pabpc4	66	30.882	MGP_AKRJ_G0026362	Myef2	57	35.526
MGP_AKRJ_G0028651	Pabpc4	68	31.944	MGP_AKRJ_G0025277	Celf2	59	37.500
MGP_AKRJ_G0028651	Pabpc4	56	32.278	MGP_AKRJ_G0020559	Hnrnpa0	50	33.113
MGP_AKRJ_G0028651	Pabpc4	100	33.824	MGP_AKRJ_G0034378	Elavl3	92	33.735
MGP_AKRJ_G0028651	Pabpc4	100	33.333	MGP_AKRJ_G0032997	Tial1	94	30.233
MGP_AKRJ_G0028651	Pabpc4	77	36.709	MGP_AKRJ_G0019408	Rbfox3	67	39.130
MGP_AKRJ_G0028651	Pabpc4	100	78.659	MGP_AKRJ_G0026976	-	76	96.296
MGP_AKRJ_G0028651	Pabpc4	67	32.394	MGP_AKRJ_G0027480	Celf3	69	33.784
MGP_AKRJ_G0028651	Pabpc4	98	35.294	MGP_AKRJ_G0028486	Elavl4	87	30.921
MGP_AKRJ_G0028651	Pabpc4	100	70.874	MGP_AKRJ_G0035943	Pabpc5	94	65.556
MGP_AKRJ_G0028651	Pabpc4	68	33.333	MGP_AKRJ_G0026079	Celf1	70	38.636
MGP_AKRJ_G0028651	Pabpc4	66	34.783	MGP_AKRJ_G0015974	Boll	60	34.722
MGP_AKRJ_G0028651	Pabpc4	67	36.620	MGP_AKRJ_G0017499	Celf5	65	38.710
MGP_AKRJ_G0028651	Pabpc4	100	33.333	MGP_AKRJ_G0030872	Tia1	95	33.333
MGP_AKRJ_G0028651	Pabpc4	98	35.294	MGP_AKRJ_G0028355	Elavl2	89	34.940
MGP_AKRJ_G0028651	Pabpc4	68	34.722	MGP_AKRJ_G0035651	Rbmx	77	37.662
MGP_AKRJ_G0028651	Pabpc4	100	89.320	MGP_AKRJ_G0024305	Pabpc2	98	67.897
MGP_AKRJ_G0028651	Pabpc4	100	87.379	MGP_AKRJ_G0023071	Pabpc6	99	68.463
MGP_AKRJ_G0028651	Pabpc4	67	33.803	MGP_AKRJ_G0024143	Celf4	62	33.028
MGP_AKRJ_G0028651	Pabpc4	100	94.175	MGP_AKRJ_G0021736	Pabpc1	98	78.331