EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AKRJ_G0028780 (Gene tree)
Gene ID: -
Gene Symbol: Trnau1ap
Alias: 1110007F05Rik|AA387999|SECp43|Secp43|Trspap1|WI1-2643G14.2
Full Name: tRNA selenocysteine 1 associated protein 1
Gene Type: protein_coding
Species: Mus_musculus_akrj
Status: putative
Strand: Minus strand
Length: 18027 bases
Position: chr4:132486890-132504916
Accession: 1919037
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AKRJ_P0068211	RRM_1	PF00076.22	9.8e-27	1	2
MGP_AKRJ_P0068211	RRM_1	PF00076.22	9.8e-27	2	2
MGP_AKRJ_P0068212	RRM_1	PF00076.22	3.3e-17	1	1
MGP_AKRJ_P0068216	RRM_1	PF00076.22	1.6e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AKRJ_T0068221	-	371	-	MGP_AKRJ_P0068221	70 (aa)	-	-
MGP_AKRJ_T0068220	-	679	-	-	- (aa)	-	-
MGP_AKRJ_T0068222	-	621	-	-	- (aa)	-	-
MGP_AKRJ_T0068214	-	650	-	-	- (aa)	-	-
MGP_AKRJ_T0068215	-	1017	-	MGP_AKRJ_P0068215	86 (aa)	-	-
MGP_AKRJ_T0068216	-	474	-	MGP_AKRJ_P0068216	146 (aa)	-	-
MGP_AKRJ_T0068217	-	600	-	MGP_AKRJ_P0068217	47 (aa)	-	-
MGP_AKRJ_T0068211	-	1130	XM_011250332	MGP_AKRJ_P0068211	287 (aa)	XP_011248634	Q80VC6
MGP_AKRJ_T0068212	-	961	-	MGP_AKRJ_P0068212	247 (aa)	-	-
MGP_AKRJ_T0068213	-	1791	-	-	- (aa)	-	-
MGP_AKRJ_T0068218	-	553	-	-	- (aa)	-	-
MGP_AKRJ_T0068219	-	663	-	MGP_AKRJ_P0068219	49 (aa)	-	-

Gene Model

Click here to download MGP_AKRJ_G0028780's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AKRJ_G0028780's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AKRJ_G0028780	Trnau1ap	98	30.952	MGP_AKRJ_G0028355	Elavl2	66	30.952
MGP_AKRJ_G0028780	Trnau1ap	88	34.211	MGP_AKRJ_G0027119	Pabpc4l	89	31.875
MGP_AKRJ_G0028780	Trnau1ap	60	32.386	MGP_AKRJ_G0032997	Tial1	73	33.019
MGP_AKRJ_G0028780	Trnau1ap	79	30.198	MGP_AKRJ_G0030872	Tia1	60	31.285