EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AKRJ_G0029094 (Gene tree)
Gene ID: -
Gene Symbol: Chd5
Alias: 4930532L22Rik|AW060752|B230399N07Rik|CHD-5|Kiaa0444
Full Name: chromodomain helicase DNA binding protein 5
Gene Type: protein_coding
Species: Mus_musculus_akrj
Status: putative
Strand: Plus strand
Length: 56200 bases
Position: chr4:153967472-154023671
Accession: 3036258
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AKRJ_P0069541	ResIII	PF04851.15	2.4e-07	1	1
MGP_AKRJ_P0069543	ResIII	PF04851.15	2.5e-07	1	1
MGP_AKRJ_P0069542	ResIII	PF04851.15	2.5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AKRJ_T0069543	-	9122	-	MGP_AKRJ_P0069543	1946 (aa)	-	-
MGP_AKRJ_T0069542	-	9486	-	MGP_AKRJ_P0069542	1952 (aa)	-	-
MGP_AKRJ_T0069541	-	9375	XM_006538929	MGP_AKRJ_P0069541	1915 (aa)	XP_006538992	A2A8L1
MGP_AKRJ_T0069545	-	6245	-	-	- (aa)	-	-
MGP_AKRJ_T0069544	-	280	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_AKRJ_G0029094's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AKRJ_G0029094's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AKRJ_G0029094	Chd5	97	70.253	MGP_AKRJ_G0018466	Chd3	95	71.160
MGP_AKRJ_G0029094	Chd5	91	73.014	MGP_AKRJ_G0031183	Chd4	96	72.343
MGP_AKRJ_G0029094	Chd5	51	34.657	MGP_AKRJ_G0026747	Chd6	66	36.621