EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AKRJ_G0029872 (Gene tree)
Gene ID: -
Gene Symbol: Msi1
Alias: Msi1|Msi1h|Musahi1|m-Msi-1
Full Name: musashi RNA-binding protein 1
Gene Type: protein_coding
Species: Mus_musculus_akrj
Status: putative
Strand: Plus strand
Length: 26058 bases
Position: chr5:117243889-117269946
Accession: 107376
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AKRJ_P0073675	RRM_1	PF00076.22	6.9e-33	1	2
MGP_AKRJ_P0073675	RRM_1	PF00076.22	6.9e-33	2	2
MGP_AKRJ_P0073676	RRM_1	PF00076.22	1.6e-28	1	2
MGP_AKRJ_P0073676	RRM_1	PF00076.22	1.6e-28	2	2
MGP_AKRJ_P0073680	RRM_1	PF00076.22	1.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AKRJ_T0073676	-	807	-	MGP_AKRJ_P0073676	268 (aa)	-	-
MGP_AKRJ_T0073677	-	367	-	-	- (aa)	-	-
MGP_AKRJ_T0073674	-	2626	-	-	- (aa)	-	-
MGP_AKRJ_T0073675	-	2988	-	MGP_AKRJ_P0073675	362 (aa)	-	-
MGP_AKRJ_T0073681	-	596	-	-	- (aa)	-	-
MGP_AKRJ_T0073680	-	726	-	MGP_AKRJ_P0073680	196 (aa)	-	-
MGP_AKRJ_T0073678	-	806	-	-	- (aa)	-	-
MGP_AKRJ_T0073679	-	581	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_AKRJ_G0029872's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AKRJ_G0029872's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AKRJ_G0029872	Msi1	58	48.052	MGP_AKRJ_G0018208	Hnrnpab	79	40.800
MGP_AKRJ_G0029872	Msi1	61	43.750	MGP_AKRJ_G0030630	Hnrnpa2b1	91	41.379
MGP_AKRJ_G0029872	Msi1	51	38.983	MGP_AKRJ_G0017425	Cirbp	87	40.351
MGP_AKRJ_G0029872	Msi1	56	41.379	MGP_AKRJ_G0032997	Tial1	69	31.469
MGP_AKRJ_G0029872	Msi1	59	40.000	MGP_AKRJ_G0025802	Hnrnpa3	70	37.879
MGP_AKRJ_G0029872	Msi1	88	42.308	MGP_AKRJ_G0017431	Dazap1	98	44.311
MGP_AKRJ_G0029872	Msi1	57	42.949	MGP_AKRJ_G0020559	Hnrnpa0	60	43.646
MGP_AKRJ_G0029872	Msi1	59	49.485	MGP_AKRJ_G0029692	Hnrnpd	100	68.000
MGP_AKRJ_G0029872	Msi1	58	48.052	MGP_AKRJ_G0029694	Hnrnpdl	75	39.676
MGP_AKRJ_G0029872	Msi1	99	75.665	MGP_AKRJ_G0018862	Msi2	100	90.323
MGP_AKRJ_G0029872	Msi1	61	51.064	MGP_AKRJ_G0026890	Rbm38	66	46.809
MGP_AKRJ_G0029872	Msi1	62	34.021	MGP_AKRJ_G0029042	Tardbp	79	34.021