EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AKRJ_G0030729 (Gene tree)
Gene ID: -
Gene Symbol: Prdm5
Alias: 4432417F03Rik|6530401I24Rik|AI197291|E130112L17Rik|PFM2
Full Name: PR domain containing 5
Gene Type: protein_coding
Species: Mus_musculus_akrj
Status: putative
Strand: Plus strand
Length: 160277 bases
Position: chr6:64817427-64977703
Accession: 1918029
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AKRJ_P0077876	zf-C2H2	PF00096.26	5.7e-59	1	9
MGP_AKRJ_P0077876	zf-C2H2	PF00096.26	5.7e-59	2	9
MGP_AKRJ_P0077876	zf-C2H2	PF00096.26	5.7e-59	3	9
MGP_AKRJ_P0077876	zf-C2H2	PF00096.26	5.7e-59	4	9
MGP_AKRJ_P0077876	zf-C2H2	PF00096.26	5.7e-59	5	9
MGP_AKRJ_P0077876	zf-C2H2	PF00096.26	5.7e-59	6	9
MGP_AKRJ_P0077876	zf-C2H2	PF00096.26	5.7e-59	7	9
MGP_AKRJ_P0077876	zf-C2H2	PF00096.26	5.7e-59	8	9
MGP_AKRJ_P0077876	zf-C2H2	PF00096.26	5.7e-59	9	9
MGP_AKRJ_P0077871	zf-C2H2	PF00096.26	1e-58	1	9
MGP_AKRJ_P0077871	zf-C2H2	PF00096.26	1e-58	2	9
MGP_AKRJ_P0077871	zf-C2H2	PF00096.26	1e-58	3	9
MGP_AKRJ_P0077871	zf-C2H2	PF00096.26	1e-58	4	9
MGP_AKRJ_P0077871	zf-C2H2	PF00096.26	1e-58	5	9
MGP_AKRJ_P0077871	zf-C2H2	PF00096.26	1e-58	6	9
MGP_AKRJ_P0077871	zf-C2H2	PF00096.26	1e-58	7	9
MGP_AKRJ_P0077871	zf-C2H2	PF00096.26	1e-58	8	9
MGP_AKRJ_P0077871	zf-C2H2	PF00096.26	1e-58	9	9
MGP_AKRJ_P0077874	zf-C2H2	PF00096.26	1e-48	1	9
MGP_AKRJ_P0077874	zf-C2H2	PF00096.26	1e-48	2	9
MGP_AKRJ_P0077874	zf-C2H2	PF00096.26	1e-48	3	9
MGP_AKRJ_P0077874	zf-C2H2	PF00096.26	1e-48	4	9
MGP_AKRJ_P0077874	zf-C2H2	PF00096.26	1e-48	5	9
MGP_AKRJ_P0077874	zf-C2H2	PF00096.26	1e-48	6	9
MGP_AKRJ_P0077874	zf-C2H2	PF00096.26	1e-48	7	9
MGP_AKRJ_P0077874	zf-C2H2	PF00096.26	1e-48	8	9
MGP_AKRJ_P0077874	zf-C2H2	PF00096.26	1e-48	9	9
MGP_AKRJ_P0077873	zf-C2H2	PF00096.26	8.2e-27	1	5
MGP_AKRJ_P0077873	zf-C2H2	PF00096.26	8.2e-27	2	5
MGP_AKRJ_P0077873	zf-C2H2	PF00096.26	8.2e-27	3	5
MGP_AKRJ_P0077873	zf-C2H2	PF00096.26	8.2e-27	4	5
MGP_AKRJ_P0077873	zf-C2H2	PF00096.26	8.2e-27	5	5
MGP_AKRJ_P0077876	zf-met	PF12874.7	1.5e-20	1	3
MGP_AKRJ_P0077876	zf-met	PF12874.7	1.5e-20	2	3
MGP_AKRJ_P0077876	zf-met	PF12874.7	1.5e-20	3	3
MGP_AKRJ_P0077871	zf-met	PF12874.7	2.7e-20	1	3
MGP_AKRJ_P0077871	zf-met	PF12874.7	2.7e-20	2	3
MGP_AKRJ_P0077871	zf-met	PF12874.7	2.7e-20	3	3
MGP_AKRJ_P0077874	zf-met	PF12874.7	8.9e-17	1	3
MGP_AKRJ_P0077874	zf-met	PF12874.7	8.9e-17	2	3
MGP_AKRJ_P0077874	zf-met	PF12874.7	8.9e-17	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AKRJ_T0077871	-	2155	XM_006506600	MGP_AKRJ_P0077871	599 (aa)	XP_006506663	Q9CXE0
MGP_AKRJ_T0077872	-	1925	-	-	- (aa)	-	-
MGP_AKRJ_T0077873	-	984	-	MGP_AKRJ_P0077873	221 (aa)	-	-
MGP_AKRJ_T0077874	-	1488	-	MGP_AKRJ_P0077874	415 (aa)	-	-
MGP_AKRJ_T0077875	-	4167	-	-	- (aa)	-	-
MGP_AKRJ_T0077876	-	1935	-	MGP_AKRJ_P0077876	579 (aa)	-	-
MGP_AKRJ_T0077877	-	1920	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_AKRJ_G0030729's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AKRJ_G0030729's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AKRJ_G0030729	Prdm5	78	44.444	MGP_AKRJ_G0031078	Zfp637	83	46.479
MGP_AKRJ_G0030729	Prdm5	67	46.667	MGP_AKRJ_G0031761	Zfp574	85	30.051
MGP_AKRJ_G0030729	Prdm5	75	34.545	MGP_AKRJ_G0026868	Zfp64	69	31.561
MGP_AKRJ_G0030729	Prdm5	74	40.104	MGP_AKRJ_G0031471	Zfp628	60	38.208
MGP_AKRJ_G0030729	Prdm5	84	32.735	MGP_AKRJ_G0031479	Zfp865	78	32.895
MGP_AKRJ_G0030729	Prdm5	74	48.913	MGP_AKRJ_G0031731	Zfp94	73	48.913
MGP_AKRJ_G0030729	Prdm5	68	47.826	MGP_AKRJ_G0031730	Zfp61	53	41.525
MGP_AKRJ_G0030729	Prdm5	67	50.847	MGP_AKRJ_G0034050	Zfp1	67	40.167
MGP_AKRJ_G0030729	Prdm5	68	48.544	MGP_AKRJ_G0034133	Snai3	55	42.336
MGP_AKRJ_G0030729	Prdm5	74	43.846	MGP_AKRJ_G0029753	Gfi1	99	45.133
MGP_AKRJ_G0030729	Prdm5	74	37.838	MGP_AKRJ_G0032951	E430018J23Rik	71	37.838
MGP_AKRJ_G0030729	Prdm5	87	46.739	MGP_AKRJ_G0024540	Zfp236	77	43.860
MGP_AKRJ_G0030729	Prdm5	76	49.451	MGP_AKRJ_G0034323	Zfp26	70	49.451
MGP_AKRJ_G0030729	Prdm5	91	39.062	MGP_AKRJ_G0021954	Zfp251	88	39.062
MGP_AKRJ_G0030729	Prdm5	73	40.562	MGP_AKRJ_G0032947	Zfp768	53	43.571
MGP_AKRJ_G0030729	Prdm5	68	42.361	MGP_AKRJ_G0030596	Repin1	84	42.069
MGP_AKRJ_G0030729	Prdm5	78	34.752	MGP_AKRJ_G0033892	Zfp319	88	34.602
MGP_AKRJ_G0030729	Prdm5	91	48.387	MGP_AKRJ_G0031900	Zfp420	95	41.722
MGP_AKRJ_G0030729	Prdm5	99	38.194	MGP_AKRJ_G0017543	Prdm4	63	38.158
MGP_AKRJ_G0030729	Prdm5	90	47.191	MGP_AKRJ_G0026830	Zfp334	67	40.000
MGP_AKRJ_G0030729	Prdm5	83	38.014	MGP_AKRJ_G0020630	Zfp759	94	39.262
MGP_AKRJ_G0030729	Prdm5	88	42.857	MGP_AKRJ_G0018288	Zfp672	86	44.286
MGP_AKRJ_G0030729	Prdm5	90	35.235	MGP_AKRJ_G0023188	Zscan10	88	44.915
MGP_AKRJ_G0030729	Prdm5	70	48.315	MGP_AKRJ_G0023182	Zfp945	77	48.315
MGP_AKRJ_G0030729	Prdm5	78	38.571	MGP_AKRJ_G0018193	Zfp454	68	38.571
MGP_AKRJ_G0030729	Prdm5	77	38.384	MGP_AKRJ_G0032029	Zfp141	72	36.760
MGP_AKRJ_G0030729	Prdm5	69	47.857	MGP_AKRJ_G0031723	Zfp112	68	39.711
MGP_AKRJ_G0030729	Prdm5	96	39.683	MGP_AKRJ_G0023165	Zfp51	98	39.683
MGP_AKRJ_G0030729	Prdm5	95	43.220	MGP_AKRJ_G0023163	Zfp677	78	36.027
MGP_AKRJ_G0030729	Prdm5	84	43.277	MGP_AKRJ_G0020629	Rslcan18	71	39.200
MGP_AKRJ_G0030729	Prdm5	76	39.726	MGP_AKRJ_G0033673	Zfp709	80	39.726
MGP_AKRJ_G0030729	Prdm5	61	45.045	MGP_AKRJ_G0026168	Wt1	55	40.876
MGP_AKRJ_G0030729	Prdm5	76	40.000	MGP_AKRJ_G0018925	Zfp652	50	36.242
MGP_AKRJ_G0030729	Prdm5	84	36.545	MGP_AKRJ_G0018338	Zfp867	95	36.545
MGP_AKRJ_G0030729	Prdm5	82	40.076	MGP_AKRJ_G0034385	Zfp872	99	40.530
MGP_AKRJ_G0030729	Prdm5	81	42.941	MGP_AKRJ_G0026402	Zfp661	65	42.941
MGP_AKRJ_G0030729	Prdm5	90	42.609	MGP_AKRJ_G0033674	Zfp882	94	35.714
MGP_AKRJ_G0030729	Prdm5	87	49.194	MGP_AKRJ_G0031726	Zfp111	70	41.528
MGP_AKRJ_G0030729	Prdm5	73	44.286	MGP_AKRJ_G0031724	Zfp235	68	39.608
MGP_AKRJ_G0030729	Prdm5	86	44.348	MGP_AKRJ_G0031725	Zfp114	76	37.011
MGP_AKRJ_G0030729	Prdm5	80	43.885	MGP_AKRJ_G0031728	Zfp108	64	41.294
MGP_AKRJ_G0030729	Prdm5	93	39.184	MGP_AKRJ_G0031729	Zfp93	99	39.184
MGP_AKRJ_G0030729	Prdm5	72	48.760	MGP_AKRJ_G0032032	Zfp715	66	39.333
MGP_AKRJ_G0030729	Prdm5	84	36.243	MGP_AKRJ_G0020646	Zfp748	92	39.735