EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AKRJ_G0030872 (Gene tree)
Gene ID: -
Gene Symbol: Tia1
Alias: 2310050N03Rik|AI256674|TIA-1|Tia|mTIA-1
Full Name: cytotoxic granule-associated RNA binding protein 1
Gene Type: protein_coding
Species: Mus_musculus_akrj
Status: putative
Strand: Plus strand
Length: 35735 bases
Position: chr6:86742612-86778346
Accession: 107914
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AKRJ_P0078562	RRM_1	PF00076.22	4.5e-68	1	3
MGP_AKRJ_P0078562	RRM_1	PF00076.22	4.5e-68	2	3
MGP_AKRJ_P0078562	RRM_1	PF00076.22	4.5e-68	3	3
MGP_AKRJ_P0078556	RRM_1	PF00076.22	1.9e-67	1	3
MGP_AKRJ_P0078556	RRM_1	PF00076.22	1.9e-67	2	3
MGP_AKRJ_P0078556	RRM_1	PF00076.22	1.9e-67	3	3
MGP_AKRJ_P0078548	RRM_1	PF00076.22	2.1e-67	1	3
MGP_AKRJ_P0078548	RRM_1	PF00076.22	2.1e-67	2	3
MGP_AKRJ_P0078548	RRM_1	PF00076.22	2.1e-67	3	3
MGP_AKRJ_P0078549	RRM_1	PF00076.22	2.1e-67	1	3
MGP_AKRJ_P0078549	RRM_1	PF00076.22	2.1e-67	2	3
MGP_AKRJ_P0078549	RRM_1	PF00076.22	2.1e-67	3	3
MGP_AKRJ_P0078557	RRM_1	PF00076.22	2.3e-58	1	3
MGP_AKRJ_P0078557	RRM_1	PF00076.22	2.3e-58	2	3
MGP_AKRJ_P0078557	RRM_1	PF00076.22	2.3e-58	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AKRJ_T0078552	-	4420	-	-	- (aa)	-	-
MGP_AKRJ_T0078553	-	612	-	-	- (aa)	-	-
MGP_AKRJ_T0078550	-	933	-	-	- (aa)	-	-
MGP_AKRJ_T0078551	-	422	-	-	- (aa)	-	-
MGP_AKRJ_T0078556	-	3130	-	MGP_AKRJ_P0078556	375 (aa)	-	-
MGP_AKRJ_T0078557	-	1445	-	MGP_AKRJ_P0078557	285 (aa)	-	-
MGP_AKRJ_T0078554	-	1203	-	MGP_AKRJ_P0078554	133 (aa)	-	-
MGP_AKRJ_T0078555	-	3856	-	-	- (aa)	-	-
MGP_AKRJ_T0078570	-	628	-	-	- (aa)	-	-
MGP_AKRJ_T0078571	-	877	-	-	- (aa)	-	-
MGP_AKRJ_T0078558	-	1290	-	MGP_AKRJ_P0078558	93 (aa)	-	-
MGP_AKRJ_T0078559	-	797	-	-	- (aa)	-	-
MGP_AKRJ_T0078574	-	585	-	-	- (aa)	-	-
MGP_AKRJ_T0078575	-	597	-	MGP_AKRJ_P0078575	105 (aa)	-	-
MGP_AKRJ_T0078572	-	2559	-	-	- (aa)	-	-
MGP_AKRJ_T0078567	-	706	-	-	- (aa)	-	-
MGP_AKRJ_T0078566	-	2660	-	-	- (aa)	-	-
MGP_AKRJ_T0078565	-	1930	-	-	- (aa)	-	-
MGP_AKRJ_T0078564	-	823	-	-	- (aa)	-	-
MGP_AKRJ_T0078563	-	864	-	-	- (aa)	-	-
MGP_AKRJ_T0078562	-	3108	-	MGP_AKRJ_P0078562	377 (aa)	-	-
MGP_AKRJ_T0078561	-	1178	-	-	- (aa)	-	-
MGP_AKRJ_T0078560	-	4326	-	MGP_AKRJ_P0078560	212 (aa)	-	-
MGP_AKRJ_T0078549	-	4477	-	MGP_AKRJ_P0078549	386 (aa)	-	-
MGP_AKRJ_T0078548	-	1789	XM_006505889	MGP_AKRJ_P0078548	385 (aa)	XP_006505952	P52912
MGP_AKRJ_T0078569	-	759	-	-	- (aa)	-	-
MGP_AKRJ_T0078568	-	750	-	-	- (aa)	-	-
MGP_AKRJ_T0078573	-	716	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_AKRJ_G0030872's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AKRJ_G0030872's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AKRJ_G0030872	Tia1	95	33.333	MGP_AKRJ_G0028651	Pabpc4	100	33.333
MGP_AKRJ_G0030872	Tia1	88	34.568	MGP_AKRJ_G0017499	Celf5	89	32.184
MGP_AKRJ_G0030872	Tia1	89	34.615	MGP_AKRJ_G0028355	Elavl2	96	34.615
MGP_AKRJ_G0030872	Tia1	87	38.095	MGP_AKRJ_G0021736	Pabpc1	57	38.095
MGP_AKRJ_G0030872	Tia1	93	38.667	MGP_AKRJ_G0027480	Celf3	76	38.462
MGP_AKRJ_G0030872	Tia1	99	31.579	MGP_AKRJ_G0033245	Elavl1	95	32.298
MGP_AKRJ_G0030872	Tia1	98	31.169	MGP_AKRJ_G0034378	Elavl3	90	37.179
MGP_AKRJ_G0030872	Tia1	95	30.000	MGP_AKRJ_G0027119	Pabpc4l	95	30.539
MGP_AKRJ_G0030872	Tia1	80	34.043	MGP_AKRJ_G0035651	Rbmx	98	34.409
MGP_AKRJ_G0030872	Tia1	78	36.000	MGP_AKRJ_G0022663	Ncbp2	51	36.000
MGP_AKRJ_G0030872	Tia1	87	32.911	MGP_AKRJ_G0024143	Celf4	63	30.682
MGP_AKRJ_G0030872	Tia1	73	35.366	MGP_AKRJ_G0016789	Rbm8a2	53	35.870
MGP_AKRJ_G0030872	Tia1	85	36.000	MGP_AKRJ_G0034812	Celf6	62	32.955
MGP_AKRJ_G0030872	Tia1	96	36.905	MGP_AKRJ_G0023071	Pabpc6	58	36.905
MGP_AKRJ_G0030872	Tia1	97	86.992	MGP_AKRJ_G0032997	Tial1	100	87.440
MGP_AKRJ_G0030872	Tia1	83	35.443	MGP_AKRJ_G0025277	Celf2	51	35.443
MGP_AKRJ_G0030872	Tia1	98	32.895	MGP_AKRJ_G0028486	Elavl4	94	35.897
MGP_AKRJ_G0030872	Tia1	77	35.897	MGP_AKRJ_G0033715	-	66	34.043
MGP_AKRJ_G0030872	Tia1	69	38.462	MGP_AKRJ_G0029692	Hnrnpd	55	35.593
MGP_AKRJ_G0030872	Tia1	77	35.870	MGP_AKRJ_G0027553	Rbm8a	54	35.870
MGP_AKRJ_G0030872	Tia1	84	34.247	MGP_AKRJ_G0035943	Pabpc5	93	33.333
MGP_AKRJ_G0030872	Tia1	60	31.285	MGP_AKRJ_G0028780	Trnau1ap	79	30.198
MGP_AKRJ_G0030872	Tia1	87	38.095	MGP_AKRJ_G0026771	Pabpc1l	59	38.095
MGP_AKRJ_G0030872	Tia1	70	41.333	MGP_AKRJ_G0035451	Rbm3	99	35.955
MGP_AKRJ_G0030872	Tia1	95	33.835	MGP_AKRJ_G0024305	Pabpc2	57	35.443
MGP_AKRJ_G0030872	Tia1	80	37.778	MGP_AKRJ_G0017425	Cirbp	91	35.714